View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9230_low_4 (Length: 316)

Name: NF9230_low_4
Description: NF9230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9230_low_4
NF9230_low_4
[»] chr8 (5 HSPs)
chr8 (127-283)||(1980145-1980301)
chr8 (57-126)||(10335362-10335431)
chr8 (57-123)||(39823432-39823498)
chr8 (57-130)||(28321007-28321080)
chr8 (57-113)||(43899091-43899147)
[»] chr5 (2 HSPs)
chr5 (57-128)||(33699973-33700044)
chr5 (57-117)||(36193822-36193882)
[»] chr6 (2 HSPs)
chr6 (57-130)||(34576144-34576217)
chr6 (57-126)||(14113395-14113464)
[»] chr7 (4 HSPs)
chr7 (57-127)||(22609883-22609953)
chr7 (59-128)||(29772428-29772497)
chr7 (57-128)||(37961602-37961673)
chr7 (58-117)||(46205840-46205899)
[»] chr3 (4 HSPs)
chr3 (57-128)||(54383662-54383733)
chr3 (80-129)||(41409796-41409845)
chr3 (59-113)||(8913940-8913994)
chr3 (57-126)||(38360172-38360241)
[»] chr1 (5 HSPs)
chr1 (57-127)||(6797497-6797567)
chr1 (59-126)||(50797990-50798057)
chr1 (58-127)||(47030427-47030496)
chr1 (62-126)||(1141554-1141618)
chr1 (65-113)||(9245802-9245850)
[»] chr2 (1 HSPs)
chr2 (57-128)||(33425099-33425170)
[»] chr4 (2 HSPs)
chr4 (57-127)||(4641600-4641670)
chr4 (81-113)||(42989762-42989794)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 1980145 - 1980301
Alignment:
Q  127 ttatgatttatggtaatgtgtcataaatttcacatggacatgacatggtatgtttatgatgttgtggttacatacatgcaaatcataaaattagagaatg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1980145 ttatgatttatggtaatgtgtcataaatttcacatggacatgacatggtatgtttatgatgttgtggttacatacatgcaaatcataaaattagagaatg 1980244  T
Q  227 taaaaatgtaatttgagttttactttcatgataaaatttaattatatatttgattac 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1980245 taaaaatgtaatttgagttttactttcatgataaaatttaattatatatttgattac 1980301  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 10335431 - 10335362
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactc 126  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  10335431 gcgtgcttctcacattatcaaagagtgttgcattagttgttcaattttggttgtacatataacacaactc 10335362  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 39823432 - 39823498
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  39823432 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttggttgtacatgtaacacaa 39823498  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 28321080 - 28321007
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactcttat 130  Q
    ||||||| ||||||   ||||||| |||||||| |||||| ||||||| |||||||||||| ||||||||||||    
T  28321080 gcgtgctcctcacaaagtcaaaggttgttgcataagttgtccaattttaattgtacatataacacaactcttat 28321007  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 43899091 - 43899147
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtaca 113  Q
    ||||||| || ||| ||| |||||||||||||||||||||||||||||| |||||||    
T  43899091 gcgtgctccttacagtattaaagggtgttgcattagttgttcaattttggttgtaca 43899147  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 33700044 - 33699973
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactctt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  33700044 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttggttgtacatataacacaactctt 33699973  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 36193822 - 36193882
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatata 117  Q
    |||||||  ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  36193822 gcgtgctcttcacaatattaaaaggtgttgcattagttgttcaattttgattgtacatata 36193882  T

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Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 34576217 - 34576144
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactcttat 130  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  34576217 gcgtgcttctcacattatcaaaaggtgttgcattagttgttcaattttgattgtatatataacacaactcttat 34576144  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 14113395 - 14113464
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactc 126  Q
    ||||||| |||||| ||||||||| |||||||| | || | ||||||| |||||||||||| ||||||||    
T  14113395 gcgtgctcctcacaatatcaaaggttgttgcataaattatccaattttaattgtacatataacacaactc 14113464  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 22609883 - 22609953
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  22609883 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttggttgtacatataatacaactct 22609953  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 29772428 - 29772497
Alignment:
Q  59 gtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactctt 128  Q
    ||||| |||||| ||||||| | |||||||| |||||||||||| |||||||||||||| || |||||||    
T  29772428 gtgctcctcacaatatcaaaagttgttgcataagttgttcaattctgattgtacatataacataactctt 29772497  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 37961602 - 37961673
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactctt 128  Q
    ||||||| |||||| | ||||||| |||||||| | |||| |||||||| ||||||||||| ||||||||||    
T  37961602 gcgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttgtacatataacacaactctt 37961673  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 46205899 - 46205840
Alignment:
Q  58 cgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatata 117  Q
    |||||| |||||| ||| ||| ||||||||||||||||| |||||||| |||||||||||    
T  46205899 cgtgctcctcacaatattaaaaggtgttgcattagttgtccaattttggttgtacatata 46205840  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 54383733 - 54383662
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactctt 128  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  54383733 gcgtgcttctcacgttatcaaaggatgttgcattagttgttcaattttggttgtacatataacacaactctt 54383662  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 41409845 - 41409796
Alignment:
Q  80 ggtgttgcattagttgttcaattttgattgtacatatatcacaactctta 129  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41409845 ggtgttgcattagttgttcaattttgattgtacatataacacaactctta 41409796  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 8913940 - 8913994
Alignment:
Q  59 gtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtaca 113  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  8913940 gtgctcctcacaatattaaaggttgttgcattagttgttcaattttgattgtaca 8913994  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 38360241 - 38360172
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactc 126  Q
    ||||||| |||||| | ||||||| |||||||| | |||| |||||||| ||||||||||| ||||||||    
T  38360241 gcgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttgtacatataacacaactc 38360172  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 6797497 - 6797567
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactct 127  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  6797497 gcgtgcttctcacattattaaagggtgttgcattagttgttcaattttagttgtacatataacacaactct 6797567  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 50798057 - 50797990
Alignment:
Q  59 gtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactc 126  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  50798057 gtgcttctcacattatcaaagggtgttgcatttgtcgttcaattttggttgtacatataacacaactc 50797990  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 47030496 - 47030427
Alignment:
Q  58 cgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactct 127  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||  ||||||||    
T  47030496 cgtgcttctcacattatcaatggttgttgcattagttgttcaattttggttgtacatataaaacaactct 47030427  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 1141554 - 1141618
Alignment:
Q  62 cttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactc 126  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  1141554 cttcttacattattaaagggtgttgcattagttattcaattttggttgtacatataacacaactc 1141618  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 9245850 - 9245802
Alignment:
Q  65 ctcacattatcaaagggtgttgcattagttgttcaattttgattgtaca 113  Q
    |||||| ||| ||| | |||||||| |||||||||||||||||||||||    
T  9245850 ctcacaatattaaaagttgttgcataagttgttcaattttgattgtaca 9245802  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 33425170 - 33425099
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactctt 128  Q
    |||||||||||||| ||||||||  |||||||| |||||| ||||||||| |||||||||| ||||| ||||    
T  33425170 gcgtgcttctcacaatatcaaagattgttgcataagttgtccaattttgaatgtacatataacacaattctt 33425099  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 4641670 - 4641600
Alignment:
Q  57 gcgtgcttctcacattatcaaagggtgttgcattagttgttcaattttgattgtacatatatcacaactct 127  Q
    |||||||||||||| | ||||||| |||||||| | || | |||||||| ||||||||||  |||||||||    
T  4641670 gcgtgcttctcacaatgtcaaaggttgttgcataaattatccaattttggttgtacatattacacaactct 4641600  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 42989794 - 42989762
Alignment:
Q  81 gtgttgcattagttgttcaattttgattgtaca 113  Q
    ||||||||||||||||||||||||| |||||||    
T  42989794 gtgttgcattagttgttcaattttggttgtaca 42989762  T

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