View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9230_low_5 (Length: 314)
Name: NF9230_low_5
Description: NF9230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9230_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 300
Target Start/End: Original strand, 39881740 - 39882008
Alignment:
| Q |
37 |
gtgacatcgtgagtttaacttatctggtaaggacatatgtggattaactggtaaagacaatgcattatatatgcaagatccgggtttcaaatcctaatnn |
136 |
Q |
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| T |
39881740 |
gtgacatcgtgagtttagcttatctggtaaggatatgtgttgattaaccggtaaggacaatgcgttatatatgcaagatccgg--ttcaaatcctaataa |
39881837 |
T |
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| Q |
137 |
nnnnnn-------cgtgaaaccaaattcatagaggatagttttagtcatgcttatccttatgcacacctcaccgagacttagtcttagaaaactaaccca |
229 |
Q |
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| T |
39881838 |
aaaaaaaaaaaaacgtgaaaccaaattcatagaggatagttttagtcatgcttatccttatgcacacctcaccgagacttagtcttagaaaactaaccca |
39881937 |
T |
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| Q |
230 |
cttccttcttcttttctaatatcttgcatgactcatcagcaaatgcaacaaccatctatcaggcccttatg |
300 |
Q |
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| T |
39881938 |
cttccttcttcttttctaatatctcgcatgactcatcagcaaatgcaacaaccatctatcaggtccttatg |
39882008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 7922295 - 7922258
Alignment:
| Q |
85 |
tggtaaagacaatgcattatatatgcaagatccgggtt |
122 |
Q |
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| T |
7922295 |
tggtaaagacaatgcataatatatgcaagatccgggtt |
7922258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 127087 - 127135
Alignment:
| Q |
82 |
aactggtaaagacaatgcattatatatgcaagatccgggtttcaaatcc |
130 |
Q |
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| T |
127087 |
aactggtaaggacaatgcattatatatgcaaggtccggggtttaaatcc |
127135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 2584046 - 2584008
Alignment:
| Q |
92 |
gacaatgcattatatatgcaagatccgggtttcaaatcc |
130 |
Q |
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| T |
2584046 |
gacaatgcattatatatgcaagatccgaggttcaaatcc |
2584008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 40575648 - 40575607
Alignment:
| Q |
91 |
agacaatgcattatatatgcaagatccgggtttcaaatccta |
132 |
Q |
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| T |
40575648 |
agacaatgcataatatatgcaaggtccggggttcaaatccta |
40575607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 13286147 - 13286184
Alignment:
| Q |
85 |
tggtaaagacaatgcattatatatgcaagatccgggtt |
122 |
Q |
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| T |
13286147 |
tggtatagacaatgcataatatatgcaagatccgggtt |
13286184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 9333747 - 9333791
Alignment:
| Q |
85 |
tggtaaagacaatgcattatatatgcaagatccgggtttcaaatc |
129 |
Q |
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| T |
9333747 |
tggtaaggacaatgcattatatatgcaaggtccggggtttaaatc |
9333791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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