View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9230_low_6 (Length: 277)
Name: NF9230_low_6
Description: NF9230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9230_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 18618230 - 18617986
Alignment:
| Q |
15 |
gactctatcaccaagtccaatatctggcttttcatcaccaaaagttttcttaagaacttgagctttcttatctccaacaagtattccaggtttacaaatc |
114 |
Q |
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| T |
18618230 |
gactctatcaccaagtccaatatcaggcttttcatcaccaaaagttttcttaagaacttgagctttcttatctccaacaagtattccaggtttacaaatc |
18618131 |
T |
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| Q |
115 |
aatccagtagctctccctttataactagcaatttcagttcccaaaaccatatcagcccccaaaaattccttcaaaaaaggctccaccatgatccttggat |
214 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18618130 |
aatccagtagctcttcccttataactagcaatttcagttcccaaaaccatatcagcccccaaaaattccttcaaaaaaggctctaccatgatccttggat |
18618031 |
T |
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| Q |
215 |
tcgcggtgagaacacaacgtttcccacacgacgaaaacacgcgcc |
259 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18618030 |
tcgcggtgagaacacagcgtttcccacacgacgaaaacacgcgcc |
18617986 |
T |
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