View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_high_11 (Length: 325)
Name: NF9231_high_11
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 32923827 - 32924136
Alignment:
| Q |
1 |
ttggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagtatacagcta |
100 |
Q |
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|||||||| || || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32923827 |
ttggggaaattgggaaaaaaattcacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagtatacagcta |
32923926 |
T |
|
| Q |
101 |
aaaatgctccaaaagttgctgatggagaagacccatacattaagaagcttgtactcaagggnnnnnnntatgatctctatgttcataggtttaatttccc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32923927 |
aaaatgctccaaaagttgctgatggagaagatccatacattaagaagcttgtactcaagggaaaaaaatatgatctctatgttcataggtttaatttccc |
32924026 |
T |
|
| Q |
201 |
actagttcttcatataatatattgatttctcataacatttataccatgcatgcctaatatattaagggattttaatttctgtcttccagttacttgcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |
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| T |
32924027 |
actagttcttcatataatatattgatttctcataacatttatacgatgcatgcctaatatattaagggcttttaatttctgtctgccagttacttacact |
32924126 |
T |
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| Q |
301 |
ttgggagaga |
310 |
Q |
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|||| ||||| |
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| T |
32924127 |
ttggtagaga |
32924136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 32911827 - 32912018
Alignment:
| Q |
1 |
ttggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagtatacagcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
32911827 |
ttggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagaaaacagcta |
32911926 |
T |
|
| Q |
101 |
aaaatgctccaaaagttgctgatggagaagacccatacattaagaagcttgtactcaagggnnnnnnntatgatctctatgttcataggttt |
192 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32911927 |
aaaatgctccaaaagttgctgatggagttgatccatacattaagaagcttgtactcaagggaaaaccatatgatctctatgttcacaggttt |
32912018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 32934934 - 32935125
Alignment:
| Q |
1 |
ttggggaatttagggaaaaag-tacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagtatacagct |
99 |
Q |
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||||||||||| ||||||||| | ||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||||||| | |||||| |
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| T |
32934934 |
ttggggaattt-gggaaaaagcttcacaaaaacagtgggagtaattgaccttggaggtggttcagttcaaatgacatatgctgtgtcaaagaaaacagct |
32935032 |
T |
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| Q |
100 |
aaaaatgctccaaaagttgctgatggagaagacccatacattaagaagcttgtactcaagggnnnnnnntatgatctctatgttcataggttt |
192 |
Q |
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|||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
32935033 |
aaaaatgctccaaaagttgcagatggagaggatccatatataaagaagcttgtactcaagggaaagcaatatgacctctatgttcataggttt |
32935125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 32900892 - 32900926
Alignment:
| Q |
46 |
gatcttggaggtggatcagttcaaatggcatatgc |
80 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
32900892 |
gatcttggaggtggatctgttcaaatggcatatgc |
32900926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 32942537 - 32942579
Alignment:
| Q |
46 |
gatcttggaggtggatcagttcaaatggcatatgcagtgtcaa |
88 |
Q |
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||||||||||| |||||||||||||||| ||||||||| |||| |
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| T |
32942537 |
gatcttggagggggatcagttcaaatggtatatgcagtctcaa |
32942579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11823966 - 11824187
Alignment:
| Q |
1 |
ttggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatggcatatgcagtgtcaaagtatacagcta |
100 |
Q |
| |
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||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
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| T |
11823966 |
ttggggactttggggaaaaaattcacaaaaacagtgggagtaatggatcttggaggtggatcggttcaaatggcatatgcagtgtcaaggaatacagcta |
11824065 |
T |
|
| Q |
101 |
aaaatgctccaaaagttgctgatggagaagacccatacattaagaagcttgtactcaaggg-nnnnnnntatgatctctatgttcataggtttaatttcc |
199 |
Q |
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|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11824066 |
aaaatgctccaaaagttgctgatggagatgatccatatattaagaagcttgtactcaagggaaaaaaaatatgatctctatgttcataggtttaatttcc |
11824165 |
T |
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| Q |
200 |
cactagttcttcatataatata |
221 |
Q |
| |
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|||||| ||||| ||||||||| |
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| T |
11824166 |
cactagctcttcgtataatata |
11824187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 11824528 - 11824601
Alignment:
| Q |
227 |
ttctcataacatttataccatgcatgcctaatatattaagggattttaatttctgtcttccagttacttgcactttgg |
304 |
Q |
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|||||||||||| ||||||||| |||||||| ||||| | | |||| |||| |||||||||||||| |||||||| |
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| T |
11824528 |
ttctcataacatatataccatg----cctaatattttaagagctcttaacttctttcttccagttacttacactttgg |
11824601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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