View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_high_5 (Length: 437)
Name: NF9231_high_5
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 8692833 - 8692575
Alignment:
| Q |
26 |
gagtgagaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttagattggttagttaaatgtgatatgat |
125 |
Q |
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| T |
8692833 |
gagtgagaggaaaatgactagtgatgttagaatgagttttggtgccattttgggtttcaattgaaccttgtttagatatgttacttaaatgtgatatgat |
8692734 |
T |
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| Q |
126 |
ggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatat--agagttcccacatgcaaattttttgggtcaaaccc |
223 |
Q |
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| T |
8692733 |
gaaagaagagaatttccaaagctcaaa-ttgatgaaaatgctaatgggttttgttatttatatagagagttcccacatgcaagttttttgggtcaaaccc |
8692635 |
T |
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| Q |
224 |
ccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcccatgtt |
283 |
Q |
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| T |
8692634 |
ccacatacaatttatgcttaactattttgtttcttttctttgctgtaattgtcccatgtt |
8692575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 8696487 - 8696667
Alignment:
| Q |
97 |
ttagattggttagttaaatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
196 |
Q |
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| T |
8696487 |
ttagataggttacttaaatgtgatatgatgaaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
8696586 |
T |
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| Q |
197 |
cacatgcaaattttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
277 |
Q |
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| T |
8696587 |
cacatgcaaattttttgggtcaaatccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
8696667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 282 - 429
Target Start/End: Complemental strand, 8692535 - 8692385
Alignment:
| Q |
282 |
tttaataatagctggtcgggtaattaagcacccattatt---ttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
378 |
Q |
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| T |
8692535 |
tttaataatagctggtcggttaattaagcacccattattattttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
8692436 |
T |
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| Q |
379 |
gattcatagaaaagattgatgagatgccaagaaagtattaggagtataatc |
429 |
Q |
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| T |
8692435 |
gattcatagaaaagattgatgagatgccaagaaagtattaggagtaaaatc |
8692385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 8678539 - 8678359
Alignment:
| Q |
113 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagag-------------ttcccac |
199 |
Q |
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| T |
8678539 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatggggtttgttgcttatatagagatttcctaacatattcccac |
8678440 |
T |
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| Q |
200 |
atgcaa-attttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcccatgtt |
283 |
Q |
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| T |
8678439 |
atgcaatatttttttggtcaaatccccacatgcaa-ttatgcttagctattttgtttctt---tttgctgtaattatcccatgtt |
8678359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 8674610 - 8674446
Alignment:
| Q |
18 |
tctatgaagagtgagaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttagattggttagttaaatgt |
117 |
Q |
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| T |
8674610 |
tctaagaaaagtgagaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtgttacaattgaacctt-----ggttggtt-----aatgt |
8674521 |
T |
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| Q |
118 |
gatatgatggaagaagaga-atttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatataga |
191 |
Q |
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| T |
8674520 |
gatatgatggaagaagagagcttttcaatgctcaagtttgatgaaaatgctaatggggtgtgttacttaaataga |
8674446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 8687856 - 8687938
Alignment:
| Q |
18 |
tctatgaagagtgagaggaaaatgactagtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttag |
100 |
Q |
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| T |
8687856 |
tctatgaagagtgagaggaaaatgattagtgatgtgagaatgaatttttgttccattttgtgttacaattgaaccttggttag |
8687938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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