View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_10 (Length: 497)
Name: NF9231_low_10
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 37320599 - 37321061
Alignment:
| Q |
15 |
tcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| || |||||||| || ||||||||||| |
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| T |
37320599 |
tcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagttttgattcacgttcgggtccagccgtcaa |
37320698 |
T |
|
| Q |
115 |
tgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacg |
214 |
Q |
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||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320699 |
ggggtcatccatcgccacaactgtcccgaatggcaaggcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacg |
37320798 |
T |
|
| Q |
215 |
atgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggataggcttttatagtaattagtggcagtggcaaggg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320799 |
atgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggataggcttttatagtaattagtggcagtggcaaggg |
37320898 |
T |
|
| Q |
315 |
atattatggagacgaaagtaaggttcaaagaaatgagaattgtggaacatgatgagaattttgccatggttgatgtgaatgaactaagaatgctttatgt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37320899 |
atattatggagacgaaagtaaggttcaaagaaatgagaattgtggaacatgatgagaattttgccatggttgatgtgaatgaactaagaatgcttt---t |
37320995 |
T |
|
| Q |
415 |
tgttgttcttgttgaggatccgataatgaacttataagaatgctattactatgaaaaatgtctctg |
480 |
Q |
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| T |
37320996 |
tgttgttgttgttgaggatcggataatgaacttataagaatgctattactatgaaaaatgtctctg |
37321061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 37317020 - 37317414
Alignment:
| Q |
15 |
tcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37317020 |
tcatcaccatcattagtcccatctcctcttgtgatattgaagtgtaaattccttgagccttacccacaagtttcgagtcacgttcaggaccagcagtcaa |
37317119 |
T |
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| Q |
115 |
tgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317120 |
tgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacg |
37317219 |
T |
|
| Q |
215 |
atgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggataggcttttatagtaattagtggcagtggcaaggg |
314 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
37317220 |
atgtcgtgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaacccaacattgttggggataggttttgatagtaattagtggcagtggcaaggg |
37317319 |
T |
|
| Q |
315 |
atattatggagacgaaagtaaggttcaaagaaatgagaa---ttgtggaacatgatgagaattttgccatggttgatgtgaatgaactaagaatg |
406 |
Q |
| |
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||||||| |||| ||||||||||||||||||||| |||| || |||| ||| |||| |||||||||||||||||| |||||||| ||||||| |
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| T |
37317320 |
atattatagagaggaaagtaaggttcaaagaaattagaagagttatggagaatgttgaggattttgccatggttgatgcgaatgaacaaagaatg |
37317414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 15 - 401
Target Start/End: Original strand, 37324580 - 37324968
Alignment:
| Q |
15 |
tcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaa |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
37324580 |
tcatcaccatcattagtcccatctcctcttgtgatatagaagtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccgtcaa |
37324679 |
T |
|
| Q |
115 |
tgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacg |
214 |
Q |
| |
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||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
37324680 |
tggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctataaataccatgcttggttttggtcccgacaca |
37324779 |
T |
|
| Q |
215 |
atgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggataggcttttatagtaattagtggcagtggcaaggg |
314 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| ||||| |
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| T |
37324780 |
atgtcatgaaagtaaaagtgaaggtgagtgaatttctcttcttgaaaacccagcattgttggagataggctttgatagtaattagtggccgtggtaaggg |
37324879 |
T |
|
| Q |
315 |
atattatggagacgaaagtaaggttcaaagaaatgagaa---ttgtggaacatgatgagaattttgccatggttgatgtgaatgaactaa |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| || ||| ||| |||| ||||||||||||||| ||| |||||||||| |
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| T |
37324880 |
atattatggagaggaaagtaaggttcaaagaaattagaagagttatggggaatgttgaggattttgccatggttg-tgttaatgaactaa |
37324968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 37306675 - 37306978
Alignment:
| Q |
15 |
tcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtcaa |
114 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| || ||| ||||||||||| |||||||| |||||||||||| ||||||| ||| |||||| |
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| T |
37306675 |
tcataaccatcattagtcccatctcatcttgtgatattacagcgtaaattccttgagctttacccacgagtttcgagtcaagttcaggcccaatcgtcaa |
37306774 |
T |
|
| Q |
115 |
tgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctaggttttggtcctgacacg |
214 |
Q |
| |
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|| |||||||||||||| || ||||||||||| | | |||| ||||||| |||||||| ||||| | || |||| | ||| || ||| || |
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| T |
37306775 |
cggatcatccatggccaccactgtcccgaatggaagagagttttcagccttgccgttgggctcggctactatcactgtgcttgctttggggccttccata |
37306874 |
T |
|
| Q |
215 |
atgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttgaaaacccagcattgttggggataggcttttatagtaattagtggcagtggcaaggg |
314 |
Q |
| |
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| |||||| || || || |||||||| ||||||||||||||||||||||||| || | ||| |||| |||||| |||||||| ||||| || || |||| |
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| T |
37306875 |
acgtcgtggaaatagaagtgaaggtgggtgaatttctcttcttgaaaacccaacaaagctggagataagcttttgtagtaattggtggctgtagccaggg |
37306974 |
T |
|
| Q |
315 |
atat |
318 |
Q |
| |
|
|||| |
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|
| T |
37306975 |
atat |
37306978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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