View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_16 (Length: 431)
Name: NF9231_low_16
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 48888696 - 48889113
Alignment:
| Q |
14 |
ttatactctgctaaggatctagatcaaagcccaaagtccttatctggtcacatgaagaatatcactgttttgaatctgctcaacaaaagtgaaaagatgc |
113 |
Q |
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| T |
48888696 |
ttatactctgctaaggatctagatcaaagcccaaagtccttatctggtcacatgaagaatatcactgttttgaatctgctcaacaaaagtgaaaagatgc |
48888795 |
T |
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| Q |
114 |
ttttgtctagcagctatgatggagtgatcattagatggattccaggcattggctatagtggtaagtttgacagtaaacaatttggattaatcaaattgtt |
213 |
Q |
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| T |
48888796 |
ttttgtctagcagctatgatggagtgatcattagatggattccaggcattggctatagtggtaagtttgacagtaaacaatttggattaatcaaattgtt |
48888895 |
T |
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| Q |
214 |
agcagctgctgaagaagaagttgttacttctggatttgacaacaaggtaactgatatatatgtgtcataactaatcattatcatcatatgggctcttcaa |
313 |
Q |
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| T |
48888896 |
agcagctgctgaagaagaagttgttacttctggatttgacaacaaggtaactgatatatatgtgtcataactaatcattatcatcatatgggctcttcaa |
48888995 |
T |
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| Q |
314 |
ttgtcaagcttaaaaaataaccaatagatacattttatgttcagctgttctgtcatcaatgcccataccaaacataaaagtgaaactacacctctaatgt |
413 |
Q |
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| T |
48888996 |
ttgtcaagcttaaaaaataaccaatagatacattttatattcagctgttctgtcatcgatgcccatatcaaacataaaagtgaaactacacctctaatgt |
48889095 |
T |
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| Q |
414 |
cactctgattgctgaatt |
431 |
Q |
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| T |
48889096 |
cactctgattgctgaatt |
48889113 |
T |
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