View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_20 (Length: 399)
Name: NF9231_low_20
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 4 - 388
Target Start/End: Original strand, 13039409 - 13039793
Alignment:
| Q |
4 |
tccccataccccacaacaaaatggcattgctgaacgtaaacaccatcatataatagaaacaacatgtactttgcttattaatgccaatgttcctttgaaa |
103 |
Q |
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| T |
13039409 |
tccccatactccaaaacaaaatggcattgttgaacgtaaacatcgtcatataattgaaacaacacgtactttgcttattaatgccaatgttcctttgaaa |
13039508 |
T |
|
| Q |
104 |
ttttggggcgatgctgtcctcactccaggatacttgattaatagaatgtcataatctgcaatccaaaacaaggttactcattgcatattgttccctgatt |
203 |
Q |
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| T |
13039509 |
ttttggggtgatgctgtcctcactacaggatacttgattaatagaatgccatcatctgtaatccaaaacaaggttccccattccatattgttccctgatg |
13039608 |
T |
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| Q |
204 |
aacctttgtttcgtatcgcacctcgggtttttggatcaaattgnnnnnnncatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatg |
303 |
Q |
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| T |
13039609 |
aacctttgtttcgtattgctcctcggatttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtaaaattaaatg |
13039708 |
T |
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| Q |
304 |
tgtctttctaggctattcaagagttcaaaaatgatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc |
388 |
Q |
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| T |
13039709 |
tgtctttctaggctattcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc |
13039793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 17724788 - 17725188
Alignment:
| Q |
1 |
ttgtccccataccccacaacaaaatggcattgctgaacgtaaacaccatcatataatagaaacaacatgtactttgcttattaatgccaatgttcctttg |
100 |
Q |
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| T |
17724788 |
ttgtccccataccccacaacaaaatggcattgctgaacgtaaacaccgtcatataattgaaacagcacgtactttgcttattcatgccaatgttcctttg |
17724887 |
T |
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| Q |
101 |
aaattttggggcgatgctgtcctcactccaggatacttgatt-------------aatagaatgtcataatctgcaatccaaaacaaggttactcattgc |
187 |
Q |
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| T |
17724888 |
aaattttggggtgatgctgtcctcactgcaggatacttgattgatagaatggattaatagaatgccatcatctgcaatccaaaacaaggttccccattcc |
17724987 |
T |
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| Q |
188 |
atattgttccctgattaacctttgtttcgtatcgcacctcgggtttttggatcaaattgnnnnnnncatgatcttactccaggtttagataaattgtgtg |
287 |
Q |
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| T |
17724988 |
atattgttccctgatgaacctttgtttcgtattgctcctcggatttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtg |
17725087 |
T |
|
| Q |
288 |
ctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaatgatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgt |
387 |
Q |
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| T |
17725088 |
ctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgt |
17725187 |
T |
|
| Q |
388 |
c |
388 |
Q |
| |
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| |
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| T |
17725188 |
c |
17725188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 254 - 388
Target Start/End: Complemental strand, 11025977 - 11025843
Alignment:
| Q |
254 |
catgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaatgatatcggtgctattgtc |
353 |
Q |
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| T |
11025977 |
catgatcttactcaaggtttagataaaatgtttgctcgtgcagttaaatgtgtctttctcagcgattcaagagtttagaaaggatataagtgctattgtc |
11025878 |
T |
|
| Q |
354 |
cctccacacatcgcttctacatgtctgctgatgtc |
388 |
Q |
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| T |
11025877 |
catcaacgcatagcttctacatgtttgttgatgtc |
11025843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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