View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9231_low_23 (Length: 369)

Name: NF9231_low_23
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9231_low_23
NF9231_low_23
[»] chr6 (19 HSPs)
chr6 (2-369)||(34383476-34383843)
chr6 (1-102)||(28982526-28982627)
chr6 (1-103)||(2204287-2204389)
chr6 (6-100)||(10729658-10729755)
chr6 (1-95)||(5456742-5456836)
chr6 (8-96)||(354364-354451)
chr6 (1-49)||(3339438-3339486)
chr6 (5-63)||(23632560-23632619)
chr6 (1-49)||(15328573-15328621)
chr6 (1-49)||(25924803-25924851)
chr6 (9-103)||(11113899-11113993)
chr6 (3-49)||(1688312-1688358)
chr6 (172-208)||(6577114-6577150)
chr6 (1-49)||(11742923-11742971)
chr6 (1-49)||(15364743-15364791)
chr6 (1-102)||(16743151-16743253)
chr6 (1-102)||(23653778-23653880)
chr6 (1-49)||(24437528-24437576)
chr6 (1-49)||(32729973-32730021)
[»] chr3 (53 HSPs)
chr3 (1-104)||(31350489-31350592)
chr3 (1-99)||(49875879-49875976)
chr3 (1-105)||(15927477-15927581)
chr3 (1-100)||(46114248-46114347)
chr3 (12-103)||(31930919-31931010)
chr3 (1-96)||(33976285-33976380)
chr3 (9-103)||(31664700-31664794)
chr3 (12-104)||(37143199-37143289)
chr3 (1-101)||(50886277-50886375)
chr3 (7-103)||(41610406-41610502)
chr3 (12-100)||(31425626-31425714)
chr3 (14-99)||(4617774-4617859)
chr3 (5-101)||(23553477-23553573)
chr3 (1-99)||(50886477-50886577)
chr3 (5-99)||(43898652-43898746)
chr3 (2-99)||(35986998-35987094)
chr3 (20-100)||(1291619-1291699)
chr3 (12-99)||(36639197-36639284)
chr3 (1-103)||(11327192-11327295)
chr3 (5-49)||(40367697-40367741)
chr3 (1-44)||(16295548-16295591)
chr3 (5-99)||(23553666-23553759)
chr3 (8-102)||(34608191-34608285)
chr3 (2-43)||(14838990-14839031)
chr3 (1-49)||(25142712-25142760)
chr3 (1-49)||(26279968-26280016)
chr3 (1-49)||(34021402-34021450)
chr3 (1-49)||(35272111-35272159)
chr3 (1-49)||(37710488-37710536)
chr3 (8-99)||(41448071-41448162)
chr3 (1-36)||(19962017-19962052)
chr3 (1-44)||(32795920-32795963)
chr3 (5-43)||(20549330-20549368)
chr3 (1-64)||(20714327-20714392)
chr3 (1-100)||(36869724-36869824)
chr3 (1-100)||(42102321-42102421)
chr3 (1-43)||(44689887-44689929)
chr3 (1-50)||(8066439-8066488)
chr3 (1-63)||(13159745-13159809)
chr3 (1-49)||(7153-7201)
chr3 (24-103)||(25348225-25348304)
chr3 (1-49)||(30400095-30400143)
chr3 (1-49)||(33007444-33007492)
chr3 (6-71)||(35376467-35376533)
chr3 (1-49)||(37215170-37215218)
chr3 (1-49)||(37303467-37303515)
chr3 (8-59)||(39284597-39284649)
chr3 (1-49)||(39604185-39604233)
chr3 (1-49)||(40478226-40478274)
chr3 (5-49)||(45292967-45293011)
chr3 (1-49)||(45295678-45295726)
chr3 (1-49)||(46092898-46092946)
chr3 (1-49)||(46473212-46473260)
[»] chr7 (33 HSPs)
chr7 (1-99)||(2819338-2819436)
chr7 (6-97)||(12651212-12651303)
chr7 (10-99)||(19223540-19223629)
chr7 (1-99)||(11778663-11778761)
chr7 (1-99)||(17117046-17117144)
chr7 (1-49)||(48814744-48814792)
chr7 (8-59)||(34305680-34305731)
chr7 (10-95)||(44255789-44255874)
chr7 (8-69)||(27305944-27306005)
chr7 (7-64)||(41750195-41750253)
chr7 (10-95)||(18736096-18736180)
chr7 (1-63)||(33050267-33050331)
chr7 (1-49)||(47424924-47424972)
chr7 (56-103)||(2069398-2069445)
chr7 (10-49)||(31289301-31289340)
chr7 (1-101)||(37392127-37392228)
chr7 (18-63)||(9792870-9792916)
chr7 (14-96)||(28565951-28566032)
chr7 (1-104)||(40693411-40693515)
chr7 (1-43)||(41910130-41910172)
chr7 (6-43)||(1709373-1709410)
chr7 (12-49)||(22706212-22706249)
chr7 (1-63)||(42431807-42431871)
chr7 (2-39)||(47099038-47099075)
chr7 (51-100)||(48591151-48591200)
chr7 (8-59)||(2849447-2849499)
chr7 (4-44)||(11070315-11070355)
chr7 (1-49)||(22330570-22330618)
chr7 (1-41)||(25272675-25272715)
chr7 (1-49)||(30862720-30862768)
chr7 (1-49)||(37351929-37351977)
chr7 (1-44)||(45335946-45335990)
chr7 (1-41)||(48522240-48522280)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-99)||(1089-1187)
[»] chr5 (41 HSPs)
chr5 (1-106)||(16594260-16594362)
chr5 (10-102)||(25603553-25603643)
chr5 (1-100)||(29499664-29499763)
chr5 (10-103)||(13739530-13739623)
chr5 (8-101)||(26009128-26009220)
chr5 (12-98)||(16967367-16967453)
chr5 (5-100)||(5899774-5899869)
chr5 (5-63)||(34379542-34379601)
chr5 (18-95)||(21575637-21575714)
chr5 (10-64)||(27546424-27546478)
chr5 (1-63)||(1760445-1760509)
chr5 (52-101)||(16967501-16967549)
chr5 (1-49)||(7144659-7144707)
chr5 (1-102)||(11464008-11464110)
chr5 (8-59)||(15022165-15022217)
chr5 (10-49)||(1981976-1982015)
chr5 (12-95)||(10008409-10008490)
chr5 (1-44)||(27340953-27340996)
chr5 (12-67)||(42807194-42807248)
chr5 (1-64)||(25345422-25345487)
chr5 (8-49)||(2629911-2629952)
chr5 (1-95)||(4954550-4954645)
chr5 (1-63)||(15622128-15622192)
chr5 (1-99)||(23991315-23991414)
chr5 (2-43)||(36581412-36581453)
chr5 (12-49)||(38426301-38426338)
chr5 (1-49)||(125176-125224)
chr5 (5-49)||(4985451-4985495)
chr5 (5-49)||(8959248-8959292)
chr5 (1-49)||(9596753-9596801)
chr5 (1-49)||(12512877-12512925)
chr5 (1-49)||(14323907-14323955)
chr5 (1-49)||(19271943-19271991)
chr5 (1-49)||(19376071-19376119)
chr5 (9-49)||(21062237-21062277)
chr5 (1-49)||(29803307-29803355)
chr5 (1-49)||(30574316-30574364)
chr5 (1-49)||(34381096-34381144)
chr5 (1-49)||(39595358-39595406)
chr5 (1-49)||(41192671-41192719)
chr5 (7-72)||(41210429-41210495)
[»] chr1 (52 HSPs)
chr1 (1-99)||(5466223-5466321)
chr1 (1-91)||(36775190-36775280)
chr1 (10-100)||(46859524-46859614)
chr1 (1-101)||(27260595-27260695)
chr1 (10-102)||(49660061-49660153)
chr1 (1-100)||(38762203-38762302)
chr1 (10-100)||(35414463-35414553)
chr1 (14-96)||(38289662-38289744)
chr1 (10-96)||(48872712-48872798)
chr1 (10-103)||(41411050-41411143)
chr1 (9-95)||(18982596-18982682)
chr1 (1-100)||(29936827-29936926)
chr1 (1-100)||(42824536-42824635)
chr1 (5-72)||(32966355-32966423)
chr1 (18-103)||(4604713-4604798)
chr1 (1-50)||(25995544-25995593)
chr1 (1-49)||(7203783-7203831)
chr1 (1-49)||(15061929-15061977)
chr1 (8-59)||(35883535-35883587)
chr1 (1-41)||(50460659-50460699)
chr1 (2-49)||(2257633-2257680)
chr1 (1-44)||(2827654-2827697)
chr1 (1-101)||(13813642-13813743)
chr1 (10-49)||(15067766-15067805)
chr1 (60-99)||(27260739-27260778)
chr1 (3-95)||(43640879-43640972)
chr1 (1-43)||(578888-578930)
chr1 (1-43)||(30414948-30414990)
chr1 (1-43)||(48962070-48962112)
chr1 (8-97)||(49804826-49804915)
chr1 (12-49)||(16583001-16583038)
chr1 (8-49)||(30057370-30057411)
chr1 (1-50)||(47059828-47059877)
chr1 (5-49)||(702425-702469)
chr1 (1-49)||(4604613-4604661)
chr1 (5-49)||(5477102-5477146)
chr1 (1-49)||(6829724-6829772)
chr1 (1-49)||(6841875-6841923)
chr1 (1-41)||(15466831-15466871)
chr1 (12-48)||(18610865-18610901)
chr1 (1-49)||(22171455-22171503)
chr1 (1-49)||(25302584-25302632)
chr1 (1-49)||(27091507-27091555)
chr1 (8-59)||(27804760-27804812)
chr1 (1-49)||(29362631-29362679)
chr1 (1-49)||(39010898-39010946)
chr1 (1-49)||(40595993-40596041)
chr1 (1-37)||(40612198-40612234)
chr1 (5-49)||(46039991-46040035)
chr1 (52-96)||(48872590-48872634)
chr1 (5-49)||(49189150-49189194)
chr1 (1-49)||(50527996-50528044)
[»] chr8 (31 HSPs)
chr8 (1-96)||(12171981-12172077)
chr8 (1-96)||(12416409-12416505)
chr8 (10-104)||(12946511-12946605)
chr8 (6-110)||(7612085-7612190)
chr8 (12-96)||(40649560-40649645)
chr8 (5-49)||(31266172-31266216)
chr8 (2-99)||(10309769-10309866)
chr8 (35-100)||(44952746-44952811)
chr8 (6-103)||(44712516-44712613)
chr8 (7-49)||(1370369-1370411)
chr8 (1-49)||(29509350-29509398)
chr8 (1-44)||(20995002-20995045)
chr8 (1-44)||(23709060-23709103)
chr8 (2-49)||(33415650-33415697)
chr8 (1-100)||(37792050-37792148)
chr8 (1-51)||(9000951-9001001)
chr8 (7-49)||(16700851-16700893)
chr8 (1-43)||(25430730-25430772)
chr8 (1-43)||(27300430-27300472)
chr8 (1-43)||(34838215-34838257)
chr8 (20-102)||(36023186-36023268)
chr8 (5-50)||(36015645-36015690)
chr8 (6-58)||(39031157-39031210)
chr8 (1-49)||(295630-295678)
chr8 (1-49)||(426185-426233)
chr8 (1-49)||(2597099-2597147)
chr8 (5-49)||(5359426-5359470)
chr8 (5-100)||(14127334-14127429)
chr8 (1-49)||(22767214-22767262)
chr8 (5-49)||(36497749-36497793)
chr8 (1-49)||(41273599-41273647)
[»] chr2 (35 HSPs)
chr2 (1-100)||(41317282-41317381)
chr2 (1-110)||(4969410-4969521)
chr2 (5-49)||(40210006-40210050)
chr2 (8-102)||(15260397-15260491)
chr2 (1-102)||(36193611-36193712)
chr2 (1-100)||(36003451-36003550)
chr2 (2-102)||(7438653-7438754)
chr2 (8-50)||(32900264-32900306)
chr2 (8-94)||(37468158-37468241)
chr2 (1-49)||(31415154-31415202)
chr2 (1-44)||(7086068-7086111)
chr2 (1-44)||(19523345-19523388)
chr2 (1-44)||(23344933-23344976)
chr2 (1-44)||(38688993-38689036)
chr2 (6-101)||(11084805-11084901)
chr2 (1-43)||(11152644-11152686)
chr2 (8-97)||(15610725-15610814)
chr2 (1-39)||(18508162-18508200)
chr2 (5-43)||(18749308-18749346)
chr2 (1-43)||(38027560-38027602)
chr2 (8-59)||(40602313-40602366)
chr2 (8-64)||(13453878-13453935)
chr2 (1-63)||(23048006-23048070)
chr2 (1-63)||(36383546-36383610)
chr2 (1-49)||(6365270-6365318)
chr2 (1-49)||(10550398-10550446)
chr2 (1-49)||(10749618-10749666)
chr2 (1-49)||(13104563-13104611)
chr2 (1-102)||(28165213-28165315)
chr2 (12-59)||(28481874-28481922)
chr2 (1-49)||(30973930-30973978)
chr2 (8-59)||(31629695-31629747)
chr2 (1-49)||(32750082-32750130)
chr2 (1-49)||(42081121-42081169)
chr2 (1-49)||(44484595-44484643)
[»] chr4 (45 HSPs)
chr4 (1-101)||(3698398-3698498)
chr4 (1-101)||(23719407-23719507)
chr4 (5-49)||(7146070-7146114)
chr4 (42-101)||(54128172-54128231)
chr4 (2-96)||(33085245-33085339)
chr4 (7-99)||(50645515-50645608)
chr4 (1-98)||(54342867-54342964)
chr4 (52-100)||(4272455-4272503)
chr4 (5-63)||(54909412-54909471)
chr4 (1-49)||(8455987-8456035)
chr4 (5-49)||(51734571-51734615)
chr4 (8-102)||(32871715-32871809)
chr4 (5-99)||(54199184-54199278)
chr4 (1-69)||(22257114-22257183)
chr4 (9-102)||(25467887-25467980)
chr4 (1-49)||(4550418-4550466)
chr4 (1-49)||(12706249-12706297)
chr4 (1-49)||(31178657-31178705)
chr4 (1-101)||(3475952-3476053)
chr4 (2-49)||(39844197-39844244)
chr4 (1-101)||(44368088-44368189)
chr4 (1-44)||(45678347-45678390)
chr4 (6-44)||(33438134-33438172)
chr4 (2-44)||(44539379-44539421)
chr4 (1-63)||(3223073-3223137)
chr4 (1-63)||(5208250-5208314)
chr4 (1-63)||(27001332-27001396)
chr4 (1-50)||(32365605-32365654)
chr4 (2-43)||(50291367-50291408)
chr4 (1-63)||(51377216-51377280)
chr4 (1-49)||(4100693-4100740)
chr4 (1-49)||(4896439-4896487)
chr4 (1-49)||(8026703-8026751)
chr4 (1-49)||(9162150-9162198)
chr4 (1-41)||(11064036-11064076)
chr4 (1-49)||(15515868-15515916)
chr4 (5-49)||(15638218-15638262)
chr4 (1-102)||(18874809-18874911)
chr4 (1-49)||(30778203-30778251)
chr4 (1-49)||(31221497-31221545)
chr4 (5-49)||(32408413-32408457)
chr4 (5-49)||(32901417-32901461)
chr4 (1-49)||(41495097-41495145)
chr4 (1-69)||(54036448-54036516)
chr4 (1-49)||(54165098-54165146)
[»] scaffold0295 (2 HSPs)
scaffold0295 (9-103)||(6028-6122)
scaffold0295 (9-106)||(3540-3637)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-63)||(147179-147243)
[»] scaffold0576 (1 HSPs)
scaffold0576 (1-49)||(9514-9562)
[»] scaffold0514 (1 HSPs)
scaffold0514 (1-49)||(1435-1483)
[»] scaffold0115 (1 HSPs)
scaffold0115 (1-49)||(35432-35480)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-49)||(204386-204434)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-49)||(337202-337250)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 369
Target Start/End: Complemental strand, 34383843 - 34383476
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34383843 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt 34383744  T
Q  102 ttattattaatgatnnnnnnnnnttgtactttgttaaatgacaaaactagccccttaagttggcaaagaagataatcgaatttgagactttcgagagaag 201  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34383743 ttattattaatgataaaaaaaaattgtactttgttaaatgacaaaactagccccttaagttggcaaagaagataatcgaatttgagactttcgagagaag 34383644  T
Q  202 catactctaaggtttcatgccaacatctccggaccaacgttagtaacttttttcaatggtaaatgttaattgttaatttgttatattagtttttacacca 301  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34383643 catactctaaggtttcatgccaacatcttcggaccaacgttagtaacttttttcaatggtaaatgttaattgttaatttgttagattagtttttacacca 34383544  T
Q  302 ttaatactagagctaggagtagtgaaaatggctattggttgtattggcggagctaggattattgtaaa 369  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  34383543 ttaaaactagagctaggagtagtgaaaatggctattggttgcagtggcggagctaggattattgtaaa 34383476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 28982627 - 28982526
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  28982627 cttcctttttctctccctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggttgtcaaaatatcattactct 28982528  T
Q  101 tt 102  Q
    ||    
T  28982527 tt 28982526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2204389 - 2204287
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  | | ||||||||| ||||||    
T  2204389 cttcctttctctctctctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttggaaattgattattaaaatatcactcctct 2204290  T
Q  101 ttt 103  Q
    |||    
T  2204289 ttt 2204287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 10729658 - 10729755
Alignment:
Q  6 tttttctctctctattgt---tattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||   ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  10729658 tttttctctctctattgttgttattgtccagtaaaaagagaggaaaaaggttgtcactaaaagttgttggaaattggttgtcaaaatatcattactct 10729755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5456836 - 5456742
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||  ||| ||||||||||||||| |||||||| |||||||||||||||    
T  5456836 cttcttttttctctctctattgttattgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggttgtcaaaatatcatt 5456742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 354364 - 354451
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    ||||||||||||||||||||||||||| ||||||||||||||   || ||  ||||||||||| |||||||| ||||||||||||||||    
T  354364 tttctctctctattgttattgtccaat-aaaagagaggaaaaaaattatccttaaaagttgttggaaattggttgtcaaaatatcattc 354451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3339486 - 3339438
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  3339486 cttcctttttctctctctattgtttttgaccaataaaaagagagaaaaa 3339438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 23632619 - 23632560
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaa-aatggttgtcactaaa 63  Q
    |||||||||||||||||||||||||||||||| ||||||  || || |||||||||||||    
T  23632619 ctttttctctctctattgttattgtccaataagaagagaaaaacaaaggttgtcactaaa 23632560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15328573 - 15328621
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  15328573 cttcctttttctctctccattgtttttgaccaatcaaaagagaggaaaa 15328621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25924851 - 25924803
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  25924851 cttcctttttctctctccattgtttttgaccaatcaaaagagaggaaaa 25924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 11113993 - 11113899
Alignment:
Q  9 ttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    ||||||||||||||||  | |||||||| |||||||||||| ||||| |||| ||||||||||    ||||| |||  ||||||||||||||||||    
T  11113993 ttctctctctattgtttatatccaataagaagagaggaaaagtggttatcac-aaaagttgtttaggattggttgtacaaatatcattcctctttt 11113899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 1688358 - 1688312
Alignment:
Q  3 tcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||||    
T  1688358 tcctttttctctctccattgtttttaaccaataaaaagagaggaaaa 1688312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 6577150 - 6577114
Alignment:
Q  172 gataatcgaatttgagactttcgagagaagcatactc 208  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  6577150 gataatcgaatttgagactttcgagaaaagcacactc 6577114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11742971 - 11742923
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||| ||||| | ||||||| ||||    
T  11742971 cttcctttttctctctctattgtttttgaccaatgagaagagagaaaaa 11742923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15364743 - 15364791
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||||||    
T  15364743 cttcctttttctctctccattgttttttaccaatcaaaagagaggaaaa 15364791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 16743253 - 16743151
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||| ||||| | ||||||| |||||  |||||||| |  |||||||||| || | | ||| ||||||||||| ||    
T  16743253 cttcctttttctctctcaattgtttttgaccaatgagaagagagaaaaatgaggttgtca-ttgaagttgttagcaaattgttgttaaaatatcattgct 16743155  T
Q  99 cttt 102  Q
    ||||    
T  16743154 cttt 16743151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23653880 - 23653778
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||| || || | ||||||| |||||  |||||||| ||||||||||||| || ||| |||  |||||| ||| ||    
T  23653880 cttcctttttctctctcaattgtttttgacctatgagaagagagaaaaatgaggttgtca-taaaagttgttagcaaatggttgttcaaatattattgct 23653782  T
Q  99 cttt 102  Q
    ||||    
T  23653781 cttt 23653778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24437528 - 24437576
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||  |||||||||| |||||||||    
T  24437528 cttcctttttctctctccattgtttttaaccaataaaaaaagaggaaaa 24437576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32729973 - 32730021
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| |||  |||| ||||||||| ||||    
T  32729973 cttcctttttctctctctattgtttttgatcaatgaaaagagagaaaaa 32730021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31350592 - 31350489
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  31350592 cttcctttttctctctatattgttattgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttggaaattggttgtcaaaatatcattcctct 31350493  T
Q  101 ttta 104  Q
    ||||    
T  31350492 ttta 31350489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 49875879 - 49875976
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||| |||||||| |||||||||||||||||||    
T  49875879 cttcatttttctctctctattgttattgtccaatgaaaagagaggaaaa-aattgtcactaaaagttgttggaaattggttgtcaaaatatcattcctc 49875976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 15927581 - 15927477
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| | ||||  ||||||||||||| || || |||||||| ||||||||||||||| ||||    
T  15927581 cttcctttttctctcactattgttattgtccaataaaaagagcgaaaaaaagttgtcactaaaaattattggaaattggttgtcaaaatatcattactct 15927482  T
Q  101 tttat 105  Q
    |||||    
T  15927481 tttat 15927477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 46114347 - 46114248
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||| |||||||  ||||||||||||| ||||||    
T  46114347 cttcttttttctctctctattgttattgttcaatagaaagagaggaaaaaggttgtcaccaaaagttgttggaaattgattgtcaaaatatcagtcctct 46114248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 31931010 - 31930919
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    |||||||||||||||| |||||| |||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  31931010 tctctctattgttattctccaatgaaaagagaggaaaaaggttatcactaaaatttgttggaaattggttgtcaaaatatcattactctttt 31930919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 33976380 - 33976285
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||  |||||  |||||||||||||||||    
T  33976380 cttcatttttctctctctattgttattatccaataaaaagagaggaaaagtgttgtcactaaaaattgttgaaaattaaatgtcaaaatatcattc 33976285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 31664700 - 31664794
Alignment:
Q  9 ttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    |||||||||| || ||||| |||||| |||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  31664700 ttctctctctttttttattctccaatgaaaagagaggaaaaaggttatcactaaaagttgttggaaattggttgtcaaaatatcattactctttt 31664794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 37143199 - 37143289
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttta 104  Q
    |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| |||||| | ||||||||||||||| ||| ||||    
T  37143199 tctctctattgttattgtccaataaaaagag--gaaaaaggttgtcactaaaagttgttggaaattagttgtcaaaatatcattactcgttta 37143289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 50886277 - 50886375
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||  ||||||||| |||||||||  ||||||  ||||||||||||||| ||||    
T  50886277 cttcctttttctctctctattgttattgtccaataaaa--agaggaaaaacgttgtcactgaaagttgttgaaaattgattgtcaaaatatcattactct 50886374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 41610406 - 41610502
Alignment:
Q  7 ttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    |||||||||||||||||||||||| ||||||||||||| ||||  |||||||||| ||||||||  ||||| |  ||||||||||||||||||||||    
T  41610406 ttttctctctctattgttattgtctaataaaaagagagaaaaaatgttgtcactagaagttgtttaaaatttgtagtcaaaatatcattcctctttt 41610502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 31425626 - 31425714
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||  ||||| | ||||||||||||||| ||||    
T  31425626 tctctctattgttattgtccaataaaaagagaggaaaaaggttgtcattaaaaattattgaaaattagttgtcaaaatatcattactct 31425714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 4617774 - 4617859
Alignment:
Q  14 tctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||||||||||||||||||||||| |||||||||    |||||   ||| ||||| ||||||||||||||||||||||||||||    
T  4617774 tctctattgttattgtccaataaaaatagaggaaaaaaactgtcatccaaaattgtttgaaattggatgtcaaaatatcattcctc 4617859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 23553573 - 23553477
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagag-gaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt 101  Q
    |||||||||||||||||||||||||||||| |||||||||  |||| |||||||||| ||||||||| ||  |||| |||| |||||||| |||||||    
T  23553573 ctttttctctctctattgttattgtccaatgaaaagagagaaaaaaaggttgtcact-aaagttgtttgattttggttgtccaaatatcactcctctt 23553477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50886477 - 50886577
Alignment:
Q  1 cttcctttttct--ctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||  |||||||||| ||||||||||||| ||  |||||||| |||||||||  ||||||||   ||||||| ||||||||||||||||||    
T  50886477 cttcctttttctttctctctattgctattgtccaataagaatggaggaaaaaggttgtcacccaaagttgtctaaaattggttgtcaaaatatcattcct 50886576  T
Q  99 c 99  Q
    |    
T  50886577 c 50886577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 43898652 - 43898746
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||| ||||||||||||||||||||||||| |||| || ||||  ||||||| | |||||||||  ||| | | |||||||||||||||||||    
T  43898652 ctttttttctctctattgttattgtccaataagaagatagaaaaaaagttgtcaatgaaagttgtttaaaaattgttgtcaaaatatcattcctc 43898746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 35986998 - 35987094
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    ||||||||||||||| |||| |||||||| |||||||| | || |||| | || ||| |||||||||||  ||||||| |||||||||||||||||||    
T  35986998 ttcctttttctctct-tattattattgtctaataaaaaaaaagaaaaaagtttatcattaaaagttgttgaaaattggttgtcaaaatatcattcctc 35987094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 1291619 - 1291699
Alignment:
Q  20 ttgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||| |||||||| ||||| | || ||||||||| |||||| || || | ||||||||||||||||||||    
T  1291619 ttgttattgtccaattaaaagagaagaaaaagattatcactaaaaattgttaaaatttagttgtcaaaatatcattcctct 1291699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 36639197 - 36639284
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagagg-aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||||||||||||||||||||| ||||||||| ||||  |||||| || ||||||||| |||||||| |||| |||||||| |||||    
T  36639197 tctctctattgttattgtccaatagaaagagaggaaaaaatgttgtccct-aaagttgtttgaaattggttgtccaaatatcactcctc 36639284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 11327192 - 11327295
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag-gaaa-atggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||| |||| | |||||||||| |||||||| |  || |||||||  |||||||||| ||    
T  11327192 cttcctttttctctctctattgtttttgaccaataagaagagagagaaacaaggttgtcact-aaagttgtcatgaaatggatgtacaaatatcattgct 11327290  T
Q  99 ctttt 103  Q
    |||||    
T  11327291 ctttt 11327295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 40367697 - 40367741
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  40367697 ctttttctctctctattgttattatccaataagaagagaggaaaa 40367741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16295548 - 16295591
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  16295548 cttcctttttctctctctattgtttttgaccaataaaaagagag 16295591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 23553759 - 23553666
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagag-gaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    ||||||||||||||||| |||||||||||| |||||||||  |||| |||||||||| ||||||||| ||  |||| |||| |||||||| |||||    
T  23553759 ctttttctctctctatt-ttattgtccaatgaaaagagagaaaaaaaggttgtcact-aaagttgtttgattttggttgtccaaatatcactcctc 23553666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 34608191 - 34608285
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttt 102  Q
    |||||||||||||| ||||| |||||||| |||  || |||| | || || ||||||||||||  |||||   ||||||||||||||||||||||    
T  34608191 tttctctctctattattattatccaataagaaggaagaaaaaagattatccctaaaagttgtttaaaattaattgtcaaaatatcattcctcttt 34608285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 14839031 - 14838990
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  14839031 ttcctttttctctctctattgtttttgaccaataaaaagaga 14838990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25142712 - 25142760
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  25142712 cttcctttttctctctccattgtttttgaccaattaaaagagaggaaaa 25142760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26279968 - 26280016
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  26279968 cttcctttttctctctccattgtttttgaccaatgaaaagagaggaaaa 26280016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34021450 - 34021402
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||| ||||    
T  34021450 cttcctttttctctctctattgtttttgaccaataagaagagagaaaaa 34021402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35272111 - 35272159
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  35272111 cttcctttttctctctccattgtttttgaccaataaaaagagagaaaaa 35272159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37710488 - 37710536
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||| || ||| ||||||||||||||| ||||    
T  37710488 cttcctttttctctctctattatttttgaccaataaaaagagagaaaaa 37710536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 41448162 - 41448071
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagag-gaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    ||||||||||||||||| |||||| ||||||||||||  |||||| ||||||| |||||||||   ||||||  |||  ||||||||||||||    
T  41448162 tttctctctctattgtttttgtccgataaaaagagagaaaaaatgattgtcac-aaaagttgtctaaaattgattgtgtaaatatcattcctc 41448071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19962017 - 19962052
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataa 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19962017 cttcctttttctctctctattattattgtccaataa 19962052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32795920 - 32795963
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||    
T  32795920 cttcctttttctctctccattgtttttgaccaataaaaagagag 32795963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 20549368 - 20549330
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  20549368 ctttttctctctctattgtttttgaccaataaaaagaga 20549330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 20714327 - 20714392
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaa 64  Q
    ||||||||||||||||| |||||| ||| ||||||| |||| || |||||  ||||||||||||||    
T  20714327 cttcctttttctctctccattgtttttgaccaataagaagatagaaaaataaggttgtcactaaaa 20714392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 36869824 - 36869724
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||| ||||| |||||||||  ||||  |||||||| | ||||||||||| || ||| |||  |||||||||| ||    
T  36869824 cttcctttttctctctccattgtttttgaccaatgaaaagagagagaaatgaggttgtca-tgaaagttgttagcaaatggttgttcaaatatcattgct 36869726  T
Q  99 ct 100  Q
    ||    
T  36869725 ct 36869724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 42102321 - 42102421
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||| |||||||||| | || |||||  |||||||| | ||||||||||| || ||| |||  |||||||||| ||    
T  42102321 cttcctttttctctctccattgtttttgaccaataaaaaaaaagaaaaatgaggttgtca-tgaaagttgttagcaaatggttgttcaaatatcattgct 42102419  T
Q  99 ct 100  Q
    ||    
T  42102420 ct 42102421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44689887 - 44689929
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||    
T  44689887 cttcttttttctctctctattgtttttgaccaataaaaagaga 44689929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8066439 - 8066488
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat 50  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| |||||    
T  8066439 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaat 8066488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13159745 - 13159809
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  13159745 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 13159809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7201 - 7153
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| |||||||||| |||| ||||    
T  7201 cttcctttttctctctccattgtttttgaccaataaaaaaagagaaaaa 7153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 25348304 - 25348225
Alignment:
Q  24 tattgtccaataaaaagagagg-aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    ||||||||||| |||||||||| |||| |||||||||   |||||||| | |||||| |||| |||||||| |||||||||    
T  25348304 tattgtccaatcaaaagagaggaaaaaaggttgtcac-cgaagttgtttgtaattggttgtccaaatatcactcctctttt 25348225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30400143 - 30400095
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  30400143 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 30400095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33007444 - 33007492
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  33007444 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 33007492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 35376533 - 35376467
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgtta 71  Q
    |||||||||||| |||||| ||| |||||||||||||||  ||||  |||||||| ||||||||||||    
T  35376533 tttttctctctccattgtttttgaccaataaaaagagagagaaatgaggttgtca-taaaagttgtta 35376467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37215218 - 37215170
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  37215218 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 37215170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37303467 - 37303515
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| |||  |||| ||||||||| ||||    
T  37303467 cttcctttttctctctctattgtttttgatcaatgaaaagagagaaaaa 37303515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 39284649 - 39284597
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaaga-gaggaaaatggttgtcac 59  Q
    ||||||||||||||||| ||||| |||||||||| ||  ||||||||||||||    
T  39284649 tttctctctctattgtttttgtcaaataaaaagaggaaaaaaatggttgtcac 39284597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39604233 - 39604185
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  39604233 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 39604185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40478274 - 40478226
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||  |||||| ||| ||||| ||||||||||||||    
T  40478274 cttcctttttctctcttcattgtttttgaccaatcaaaagagaggaaaa 40478226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 45293011 - 45292967
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| ||| |||||||||||||| || |||||||||    
T  45293011 ctttttctctctccattcttattgtccaataagaaaagaggaaaa 45292967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45295726 - 45295678
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||  |||||| ||| ||||| ||||||||||||||    
T  45295726 cttcctttttctctctacattgtttttgaccaatcaaaagagaggaaaa 45295678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46092946 - 46092898
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||| |  |||||| ||| ||||||||||||||||||||    
T  46092946 cttcctttttctcttttcattgtttttgaccaataaaaagagaggaaaa 46092898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46473212 - 46473260
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  46473212 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 46473260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2819338 - 2819436
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||  ||||||| |||||||||||||||||||    
T  2819338 cttcgtttttctgtctctattgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaatatcattcctc 2819436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 12651303 - 12651212
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcc 97  Q
    |||||||||||||||||||||||||||||| ||| |||||||||  |||||||| |||||||||| |||||||| |||||||||||||||||    
T  12651303 tttttctctctctattgttattgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggttgtcaaaatatcattcc 12651212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 19223540 - 19223629
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||| ||||| || ||  ||||||  |||||||||||||||||||    
T  19223540 tctctctctattgttattgtccaataaaaagagaggaaaaaaattgtcattaaaaattattgaaaattgattgtcaaaatatcattcctc 19223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11778663 - 11778761
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||| |||||||||||||||| |||||||||||||| |||  || ||||   ||||| ||||||||||||  ||||||| |||||||||||||||||||    
T  11778663 cttcatttttctctctctattattattgtccaataagaaggaagaaaaaaaattgtccctaaaagttgtttaaaattggttgtcaaaatatcattcctc 11778761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 17117144 - 17117046
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    ||||||||||| |||||||||| ||||||||| ||| ||  |||||||| |||||||||  ||| ||||   ||||||| |||||||||||||||||||    
T  17117144 cttcctttttcactctctattgctattgtccagtaagaatggaggaaaaaggttgtcacccaaaattgtctaaaattggttgtcaaaatatcattcctc 17117046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48814792 - 48814744
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  48814792 cttcctttttctctctctattgttattgtccaataaaaaaagagaaaaa 48814744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 34305731 - 34305680
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcac 59  Q
    ||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  34305731 tttctctctctattgtttttgtccaataaaaatagagaaaaatggttgtcac 34305680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 44255874 - 44255789
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    |||||||||||| ||| ||||||||||||||  || |||| ||||||| ||||||||| ||  ||||||  |||||||||||||||    
T  44255874 tctctctctattattactgtccaataaaaaggaagaaaaaaggttgtccctaaaagttatttaaaattgattgtcaaaatatcatt 44255789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 27306005 - 27305944
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaa-atggttgtcactaaaagttgt 69  Q
    ||||||||||||||| | ||||||||||||||||||| ||| ||||||||||| |||||||||    
T  27306005 tttctctctctattgattttgtccaataaaaagagagaaaagatggttgtcac-aaaagttgt 27305944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 41750195 - 41750253
Alignment:
Q  7 ttttctctctctattgttattgtccaataaaaagagagg-aaaatggttgtcactaaaa 64  Q
    |||| |||||||| |||||||||||||||| |||||||| |||| ||||||||||||||    
T  41750195 ttttttctctctactgttattgtccaataagaagagaggaaaaaaggttgtcactaaaa 41750253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 18736096 - 18736180
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    ||||||| | |||||||||||||||||||| |||||||||  ||||||||||||| |||||  |||||   | |||||||||||||    
T  18736096 tctctcttttttgttattgtccaataaaaa-agaggaaaagagttgtcactaaaaattgtttaaaattatttatcaaaatatcatt 18736180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33050267 - 33050331
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag-gaaa-atggttgtcactaaa 63  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||| |||| | |||||||||||||    
T  33050267 cttcctttttctctctctattgtttttgaccaataagaagagagagaaacaaggttgtcactaaa 33050331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47424972 - 47424924
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||  ||||||||||||||||||||    
T  47424972 cttcctttttctctctccattgtttttaaccaataaaaagagaggaaaa 47424924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 2069445 - 2069398
Alignment:
Q  56 tcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    |||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  2069445 tcacaaaaagttgtttaaaattggttgtcaaaatatcattcctctttt 2069398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 31289340 - 31289301
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  31289340 tctctctctattgttattgtccaataagaagagaagaaaa 31289301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 37392127 - 37392228
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||| |||||  |||||||| | ||||||||||| || ||| |||  |||||||||| ||    
T  37392127 cttcctttttctctctccattgtttttaaccaatgaaaagagagaaaaatgaggttgtca-tgaaagttgttagcaaatggttgttcaaatatcattgct 37392225  T
Q  99 ctt 101  Q
    |||    
T  37392226 ctt 37392228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 9792870 - 9792916
Alignment:
Q  18 tattgttattgtccaataaaaagagagg-aaaatggttgtcactaaa 63  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||||    
T  9792870 tattgttattgtccaataagaagagaggaaaaaaggttgtcactaaa 9792916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 28566032 - 28565951
Alignment:
Q  14 tctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    |||||||| ||||| |||||||||||  |||||||| ||||||| |  |||||||||  ||||||  ||||||||||||||||    
T  28566032 tctctatttttattatccaataaaaaaggaggaaaa-ggttgtctcccaaagttgtttaaaattgattgtcaaaatatcattc 28565951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40693515 - 40693411
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa--tggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    |||||||||||||||||||||||| ||| ||||| | ||||||| ||||   |||||||| || |||||||||| |  ||| |||  |||||||||| ||    
T  40693515 cttcctttttctctctctattgtttttgaccaatgagaagagagaaaaaggaggttgtca-tagaagttgttagcacatggttgttcaaatatcattgct 40693417  T
Q  99 ctttta 104  Q
    ||||||    
T  40693416 ctttta 40693411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41910172 - 41910130
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  41910172 cttcctttttctctctctattgtttttgaccaataagaagaga 41910130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 1709373 - 1709410
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagaga 43  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  1709373 tttttctctctctattgtttttgaccaataaaaagaga 1709410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 22706212 - 22706249
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  22706212 tctctctattgttattatccaataaaaagagagaaaaa 22706249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42431807 - 42431871
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  42431807 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 42431871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 47099038 - 47099075
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaa 39  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  47099038 ttcctttttctttctctattgttattgttcaataaaaa 47099075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 48591200 - 48591151
Alignment:
Q  51 ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||||||  ||||||||| |||||||| ||||||||||||||| ||||    
T  48591200 ggttgtcacccaaagttgttggaaattggttgtcaaaatatcattactct 48591151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 2849499 - 2849447
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcac 59  Q
    ||||||||||||||| | ||||||||||| ||||||| |||| ||||||||||    
T  2849499 tttctctctctattgattttgtccaataagaagagagaaaaagtggttgtcac 2849447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 11070315 - 11070355
Alignment:
Q  4 cctttttctctctctattgttattgtccaataaaaagagag 44  Q
    ||||||||||||||||||||| ||| ||||| |||||||||    
T  11070315 cctttttctctctctattgtttttgaccaatgaaaagagag 11070355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22330618 - 22330570
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| || |||||| ||||||||| ||||    
T  22330618 cttcctttttctctctccattgtttttatccaatgaaaagagagaaaaa 22330570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25272675 - 25272715
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaaga 41  Q
    ||||||||||||||||| |||||||||| ||||||| ||||    
T  25272675 cttcctttttctctctccattgttattgaccaataagaaga 25272715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30862720 - 30862768
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| ||| || ||| ||||||||||||||| ||||    
T  30862720 cttcctttttctctctccattatttttgaccaataaaaagagagaaaaa 30862768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37351977 - 37351929
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||| ||||    
T  37351977 cttcttttttctctctccattgtttttgaccaataaaaagagagaaaaa 37351929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45335946 - 45335990
Alignment:
Q  1 cttcctttttctctctctattg-ttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||| || ||| |||||||||||||||    
T  45335946 cttcctttttctctctctattgttttttgaccaataaaaagagag 45335990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48522240 - 48522280
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaaga 41  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  48522240 cttcctttttctctctctattgtttttgaccaataacaaga 48522280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1187 - 1089
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||  |||||||||  ||||||| |||||||||||||||||||    
T  1187 cttcctttttctctctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcattcctc 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16594362 - 16594260
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||   |||||||| |||||||||||||||| |||    
T  16594362 cttcctttttctctctctattgttattgtccaataaaaagagaggaaataagttgtcactaaaaattg---gaaattggttgtcaaaatatcattcttct 16594266  T
Q  101 tttatt 106  Q
     |||||    
T  16594265 attatt 16594260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 25603643 - 25603553
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttt 102  Q
    |||||||||||||||||||||||||||||||||  |||||  ||| ||||||||| |||||||||||||| |||||||||||||||| |||||    
T  25603643 tctctctctattgttattgtccaataaaaagag--gaaaaatgttatcactaaaaattgttagaaattggttgtcaaaatatcattcatcttt 25603553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29499763 - 29499664
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||||||||  |||||||| ||  |||||||| | || || |||||| |||||| ||||||||||||||||||||||||||||    
T  29499763 cttcctttttctctctctattgttatcatccaataagaattgaggaaaaagattatccctaaaaattgttaaaaattggatgtcaaaatatcattcctct 29499664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 13739530 - 13739623
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    |||||||||||| ||||||||||||||||||  || |||| ||||||| ||||||||||||  || |||| |||||||||||||||||||||||    
T  13739530 tctctctctattattattgtccaataaaaaggaagaaaaaaggttgtccctaaaagttgtttaaagttggttgtcaaaatatcattcctctttt 13739623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 26009220 - 26009128
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt 101  Q
    |||||||| ||| | |||||||||||||| || ||||||||| ||||||||||||||||||||  ||||||  |||||||||||||||||||||    
T  26009220 tttctctccctagtattattgtccaataagaaaagaggaaaa-ggttgtcactaaaagttgtttaaaattgattgtcaaaatatcattcctctt 26009128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 16967453 - 16967367
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    |||||||||||||||  |||||||| || |||||||||  |||||| ||||||||||||  ||||| ||||||||||||||||||||    
T  16967453 tctctctattgttatcatccaataagaatagaggaaaaatgttgtccctaaaagttgttgaaaattagatgtcaaaatatcattcct 16967367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 5899869 - 5899774
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagagg-aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||| | |||||||||||||| |||||||| |||||||| |||| ||| |||||||||| ||||| ||  |||| ||||||||||||||||||||    
T  5899869 ctttttatttctctattgttattatccaataagaagagaggaaaaaaggtagtcactaaaa-ttgtttgattttggttgtcaaaatatcattcctct 5899774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 34379542 - 34379601
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaa-aatggttgtcactaaa 63  Q
    |||||||||||||||||||||||||||||| |||||||||||| || ||||||| |||||    
T  34379542 ctttttctctctctattgttattgtccaatgaaaagagaggaataaaggttgtctctaaa 34379601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 21575714 - 21575637
Alignment:
Q  18 tattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    ||||||||||||||| ||| ||  ||||||||  |||||||||||| ||||||  ||||||| |||||||||||||||    
T  21575714 tattgttattgtccattaagaacggaggaaaaatgttgtcactaaatgttgtttaaaattggttgtcaaaatatcatt 21575637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 27546424 - 27546478
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaa 64  Q
    |||||||||||||||||||| |||| ||||||||||||||  |||||||| ||||    
T  27546424 tctctctctattgttattgttcaatgaaaagagaggaaaaaagttgtcacgaaaa 27546478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1760445 - 1760509
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||| |||  ||||||| |||||||    
T  1760445 cttcctttttctctctctattgtttttgaccaataagaagagagaaaagcatggttgacactaaa 1760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 16967501 - 16967549
Alignment:
Q  52 gttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt 101  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  16967501 gttgtcac-aaaagttgttgaaaattggatgtcaaaatatcattcctctt 16967549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7144659 - 7144707
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||  ||||||||| ||||||||||||||| ||||    
T  7144659 cttcctttttctctctcctttgttattgaccaataaaaagagagaaaaa 7144707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11464110 - 11464008
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||| |||  | |||||||||| ||||||||||   | |||||||  |||||||||| ||    
T  11464110 cttcatttttctctctccattgtttttgaccaataaaaagagagaaaaacaaggttgtcact-aaagttgttatggaatggatgtacaaatatcattgct 11464012  T
Q  99 cttt 102  Q
    ||||    
T  11464011 cttt 11464008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 15022217 - 15022165
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcac 59  Q
    ||||||||||||||||| |||||||||||||| |||| |||| ||||||||||    
T  15022217 tttctctctctattgtttttgtccaataaaaatagagaaaaagtggttgtcac 15022165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 1981976 - 1982015
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  1981976 tctctctctattgttattgtccaataagaagagaagaaaa 1982015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 10008490 - 10008409
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    |||||||||||||||||||||||||  |||||  |||| |||||||||| |||||||||   |||||| |||| ||||||||||    
T  10008490 tctctctattgttattgtccaataaggagaga-aaaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcatt 10008409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27340953 - 27340996
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| | | |||||||||||||||    
T  27340953 cttcctttttctctctctattgttttggaccaataaaaagagag 27340996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 42807194 - 42807248
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagtt 67  Q
    ||||||||||||| |||||||||||||| |||||||||  ||||||| ||||||||    
T  42807194 tctctctattgtttttgtccaataaaaaaagaggaaaaatgttgtca-taaaagtt 42807248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 25345422 - 25345487
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaa 64  Q
    |||||||||||||||| ||||||| ||| ||||||| ||||||| |||||  | ||||||||||||    
T  25345422 cttcctttttctctctttattgtttttgaccaataagaagagagaaaaataagattgtcactaaaa 25345487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 2629911 - 2629952
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||||||||||| |||| ||||    
T  2629911 tttctctctctattgtttttgtccaataaaaatagagaaaaa 2629952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4954550 - 4954645
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    ||||||||||||||||| |||||| ||| || |||| ||||||| |||  | |||||||||| |||||||||| | | |||||||  ||||||||||    
T  4954550 cttcctttttctctctccattgtttttgacccataagaagagagaaaaacaaggttgtcact-aaagttgttatagaatggatgtagaaatatcatt 4954645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15622128 - 15622192
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  15622128 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 15622192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23991315 - 23991414
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatg--gttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    |||||||||||| |||| |||||| ||| ||||| ||||||||| ||||||  ||| |||  |||||||||||| || ||| |||  |||||||||||||    
T  23991315 cttcctttttctttctcaattgtttttgaccaatgaaaagagagaaaaatgaggttctcaa-aaaagttgttagcaaatggttgttcaaatatcattcct 23991413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 36581453 - 36581412
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||| |||||| ||| ||||||||||||||    
T  36581453 ttcctttttctctctccattgtttttgaccaataaaaagaga 36581412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 38426338 - 38426301
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  38426338 tctctctattgttattgtccaataaaaaaagaagaaaa 38426301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 125176 - 125224
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||| ||||||||||||| ||| ||||| ||||||||| ||||    
T  125176 cttcctttttttctctctattgtttttgaccaatgaaaagagagaaaaa 125224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4985451 - 4985495
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||| || |||||||| ||||||| ||||    
T  4985451 ctttttctctctctattgtttttatccaataagaagagagaaaaa 4985495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 8959248 - 8959292
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  8959248 ctttttctctctccattgtttttgaccaataaaaagagagaaaaa 8959292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9596801 - 9596753
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  9596801 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 9596753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12512877 - 12512925
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  12512877 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 12512925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14323955 - 14323907
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||| ||||    
T  14323955 cttcctttttctctctccattgtttttgaccaataaaaagtgagaaaaa 14323907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19271943 - 19271991
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  19271943 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 19271991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19376119 - 19376071
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  19376119 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 19376071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21062277 - 21062237
Alignment:
Q  9 ttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||| ||||||||||||||||||| |||| |||||||    
T  21062277 ttctctctttattgttattgtccaataagaagaaaggaaaa 21062237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29803307 - 29803355
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||| ||||||||||||||||||| ||| ||||||| ||||||| ||||    
T  29803307 cttcttttttctctctctattgtttttgaccaataataagagagaaaaa 29803355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30574364 - 30574316
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  30574364 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 30574316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34381096 - 34381144
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  34381096 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 34381144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39595358 - 39595406
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  39595358 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 39595406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41192671 - 41192719
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  41192671 cttcctttttctctctccattgtttttgaccaatcaaaagagagaaaaa 41192719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 41210495 - 41210429
Alignment:
Q  7 ttttctctctctattgttattgtccaataaaaagagaggaaaa--tggttgtcactaaaagttgttag 72  Q
    |||||||||||||||||| ||| ||||||| ||||||| ||||   |||||||| |||||||||||||    
T  41210495 ttttctctctctattgtttttgaccaataagaagagagaaaaaggaggttgtca-taaaagttgttag 41210429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5466321 - 5466223
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||  |||||||||  ||||||| |||||||||||||||||||    
T  5466321 cttcctttttctttctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcattcctc 5466223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 36775190 - 36775280
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatat 91  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||| |||||||||  ||||||||| |||||||| |||||||||||    
T  36775190 cttcctttttctctttctattgttattgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggttgtcaaaatat 36775280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 46859524 - 46859614
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||| |||||||| |||| |||||||||| ||||    
T  46859524 tctctctctattgttattgtctaataaaaagagaggaaaaagactgtcactaaaagttgttggaaattggttgtctaaatatcattactct 46859614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27260695 - 27260595
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||||||||  |||||||| || |||||||||   ||||| |||||| |||||  ||||||||||||||||||||| ||||||    
T  27260695 cttcctttttctctctctattgttatcatccaataagaacagaggaaaaatattgtctctaaaaattgttgaaaattggatgtcaaaatatcaatcctct 27260596  T
Q  101 t 101  Q
    |    
T  27260595 t 27260595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 49660061 - 49660153
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttt 102  Q
    |||||||||||||| |||||| ||||| || |||||||||  ||||||||  ||||||||| | |||||||||||||||||||||||||||||    
T  49660061 tctctctctattgtaattgtctaataagaatagaggaaaaaagttgtcacccaaagttgtttggaattggatgtcaaaatatcattcctcttt 49660153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 38762302 - 38762203
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||| |||||||||||||||| ||||||| |||||| |||  || |||| ||||||| ||||||||||||  ||||||| ||||||||||||||||||||    
T  38762302 cttcatttttctctctctattattattgttcaataagaaggaagaaaaaaggttgtccctaaaagttgtttaaaattggttgtcaaaatatcattcctct 38762203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 35414553 - 35414463
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||||||||| || |||||||||  |||||||   |||||| ||  ||||||||||||||||||||||||||||    
T  35414553 tctctctctattgttattgtccaataagaatagaggaaaaaagttgtcatccaaagttatttaaaattggatgtcaaaatatcattcctct 35414463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 38289662 - 38289744
Alignment:
Q  14 tctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    ||||||||||||||||||||||| || |||| ||||  |||||| ||||||||||||  ||||| ||||||||||||||||||    
T  38289662 tctctattgttattgtccaataagaatagagaaaaaaagttgtctctaaaagttgttgaaaatttgatgtcaaaatatcattc 38289744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 48872712 - 48872798
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    |||||||||||||| |||||||||||| || ||||||||| ||||||| | | ||||| ||  |||||||||||||| |||||||||    
T  48872712 tctctctctattgtcattgtccaataagaatagaggaaaaaggttgtcccaacaagttattgaaaattggatgtcaatatatcattc 48872798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 41411050 - 41411143
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    ||||||||||||||||||||||||||| ||  ||||||||  |||||||   |||  |||| |||||| |||||||||||||||||| ||||||    
T  41411050 tctctctctattgttattgtccaataagaatggaggaaaaaagttgtcatccaaaactgtttgaaattagatgtcaaaatatcattcatctttt 41411143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 18982596 - 18982682
Alignment:
Q  9 ttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    |||||||||||||||| || ||||||||||| |||  ||||  ||||||||  ||||||||| |||||||| | |||||||||||||    
T  18982596 ttctctctctattgttgttatccaataaaaaaagataaaaaatgttgtcacccaaagttgttggaaattggttatcaaaatatcatt 18982682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29936827 - 29936926
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||| |||||||||| ||||||||||| | |||||| ||  ||||||||  ||||| ||  |||||||||  ||||||| ||| ||||||||||||||||    
T  29936827 cttcttttttctctcactattgttattattcaataagaatggaggaaaaaagttgttacccaaagttgtttaaaattggttgttaaaatatcattcctct 29936926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 42824536 - 42824635
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||| ||||||||||||||| |||| |||||||| || |||| ||||  ||||||||  |||||||||  ||||||  |||||||| | |||||||||    
T  42824536 cttcctatttctctctctattgatattatccaataagaaaagagaaaaaaagttgtcacataaagttgtttaaaattgtttgtcaaaacaccattcctct 42824635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 32966355 - 32966423
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttag 72  Q
    ||||||||||||| |||||| ||| ||||||||||||||| |||||  ||||||||| ||||||||||||    
T  32966355 ctttttctctctccattgtttttgaccaataaaaagagagaaaaatgaggttgtcac-aaaagttgttag 32966423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4604713 - 4604798
Alignment:
Q  18 tattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    |||| |||||||||||||| ||   || ||||  |||||| ||||||||||||  ||||||| |||||||||||||||||| ||||    
T  4604713 tattattattgtccaataagaatgaagaaaaaaagttgtccctaaaagttgttttaaattggttgtcaaaatatcattcctatttt 4604798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25995544 - 25995593
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat 50  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| |||||    
T  25995544 cttcctttttctctctccattgtttttgaccaataaaaagagagaaaaat 25995593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7203831 - 7203783
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||| |||||| |||||||| ||||    
T  7203831 cttcctttttctctctctattgtttttgaccaatagaaagagagaaaaa 7203783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15061929 - 15061977
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| || |||||||||||||||| ||||    
T  15061929 cttcctttttctctctccattgtttttatccaataaaaagagagaaaaa 15061977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 35883587 - 35883535
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcac 59  Q
    ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||    
T  35883587 tttctctctctattgattttgtccaataaaaagagagaaaaagtggttgtcac 35883535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50460699 - 50460659
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaaga 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  50460699 cttcctttttctctctctattgtttttgaccaataaaaaga 50460659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 2257680 - 2257633
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  2257680 ttcctttttctctctccattgtttttgaccaatcaaaagagaggaaaa 2257633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2827697 - 2827654
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||    
T  2827697 cttcctttttctctctctattgtttttgaccaataagaagagag 2827654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13813642 - 13813743
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||| ||||||||||   | |||||||  |||||||||| ||    
T  13813642 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcact-aaagttgttatggaatggatgtacaaatatcattgct 13813740  T
Q  99 ctt 101  Q
    |||    
T  13813741 ctt 13813743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 15067805 - 15067766
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  15067805 tctctctctattgttgttgtccaataagaagagaggaaaa 15067766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 27260739 - 27260778
Alignment:
Q  60 taaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  27260739 taaaagttgttgaaaattggatgtcaaaatatcattcctc 27260778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 43640972 - 43640879
Alignment:
Q  3 tcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 95  Q
    ||||||||||||||| |||||| ||| ||||| ||||||||| |||||  |||||||| | ||||||||||| || ||| |||  ||||||||||    
T  43640972 tcctttttctctctccattgtttttgaccaatgaaaagagagaaaaatgaggttgtca-tgaaagttgttagcaaatggttgttcaaatatcatt 43640879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 578888 - 578930
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||    
T  578888 cttcatttttctctctctattgtttttgaccaataaaaagaga 578930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30414948 - 30414990
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  30414948 cttcctttttctctctctattgtttttgaccaataagaagaga 30414990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48962070 - 48962112
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  48962070 cttcctttttctctctctattgtttttgaccaataagaagaga 48962112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 49804915 - 49804826
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcc 97  Q
    ||||| ||||||||||| || ||||||||||||||||||||| ||||||| || ||||||| ||   |||||| |||  ||||||||||||    
T  49804915 tttctttctctattgtttttatccaataaaaagagaggaaaagtggttgttac-aaaagttatttagaattggttgtacaaatatcattcc 49804826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 16583038 - 16583001
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  16583038 tctctctattattattgtccaataagaagagaggaaaa 16583001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 30057370 - 30057411
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| ||||| |||||||||| |||||||    
T  30057370 tttctctctctattgtttttgtctaataaaaagaaaggaaaa 30057411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47059877 - 47059828
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat 50  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| |||||    
T  47059877 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaat 47059828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 702469 - 702425
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||    
T  702469 ctttttccctctctattgttattgtccaataagaaaggaggaaaa 702425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4604613 - 4604661
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  4604613 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 4604661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 5477146 - 5477102
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  5477146 ctttttctctctccattgtttttgaccaataaaaagagagaaaaa 5477102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6829772 - 6829724
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||| || ||| ||||||| ||||||| ||||    
T  6829772 cttcctttttctctctctattatttttgaccaataagaagagagaaaaa 6829724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6841875 - 6841923
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||| ||||    
T  6841875 cttcttttttctctctccattgtttttgaccaataaaaagagagaaaaa 6841923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15466831 - 15466871
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaaga 41  Q
    |||||||||||||||||||||||| ||| | ||||||||||    
T  15466831 cttcctttttctctctctattgtttttgacaaataaaaaga 15466871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 18610865 - 18610901
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaa 48  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  18610865 tctctctattgtttttgaccaataaaaagagaggaaa 18610901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22171503 - 22171455
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||| ||||||||||||| ||||||||||| || |||| ||||    
T  22171503 cttcctttttttctctctattgtttttgtccaataagaaaagagaaaaa 22171455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25302632 - 25302584
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||  ||||| ||||||||| ||||    
T  25302632 cttcctttttctctctctattgtttttaaccaatgaaaagagagaaaaa 25302584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27091555 - 27091507
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||  | ||||||||||||||||||    
T  27091555 cttcctttttctctctccattgttttttactaataaaaagagaggaaaa 27091507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 27804812 - 27804760
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcac 59  Q
    ||||||||||||||| | |||||||||||||| |||| |||| ||||||||||    
T  27804812 tttctctctctattgcttttgtccaataaaaatagagaaaaagtggttgtcac 27804760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29362679 - 29362631
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  29362679 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 29362631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39010898 - 39010946
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  39010898 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 39010946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40596041 - 40595993
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  40596041 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 40595993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40612198 - 40612234
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaa 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  40612198 cttcctttttctctctctattgtttttgaccaataaa 40612234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 46039991 - 46040035
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||| |||||||||||||| || ||||| ||||||||||||    
T  46039991 ctttttctttctctattgttattatctaataagaagagaggaaaa 46040035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 48872634 - 48872590
Alignment:
Q  52 gttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||    
T  48872634 gttgtctctataagttgttgaaaattggatgtcaaaatatcattc 48872590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 49189194 - 49189150
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  49189194 ctttttctctctccattgtttttgaccaatcaaaagagaggaaaa 49189150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50528044 - 50527996
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  50528044 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 50527996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12172077 - 12171981
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaa-taaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    |||| |||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||| |||||  ||||||| ||||||||||||||||    
T  12172077 cttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatcattc 12171981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12416505 - 12416409
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaa-taaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    |||| |||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||| |||||  ||||||| ||||||||||||||||    
T  12416505 cttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatcattc 12416409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 12946605 - 12946511
Alignment:
Q  10 tctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttta 104  Q
    |||||||||||||| ||||| ||||||||| |||| ||||  |||||| | ||||||||||  |||||||||||||||||||||||| |||||||    
T  12946605 tctctctctattgtcattgttcaataaaaatagagaaaaaaagttgtcccaaaaagttgttgaaaattggatgtcaaaatatcattcatctttta 12946511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 7612190 - 7612085
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt-tta 104  Q
    |||||||||||||||| |||||||| ||||| |||  || |||| | ||||| ||||||||||||  ||||||| ||||||||||||||||||||| |||    
T  7612190 tttttctctctctattattattgtctaataagaaggaagaaaaaagattgtccctaaaagttgtttaaaattggttgtcaaaatatcattcctcttatta 7612091  T
Q  105 ttatta 110  Q
    ||||||    
T  7612090 ttatta 7612085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 40649560 - 40649645
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtc-aaaatatcattc 96  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||  ||||||| |||| ||||||||||||    
T  40649560 tctctctattgctattgtccaataaaaatagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaaatatcattc 40649645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 31266216 - 31266172
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31266216 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 31266172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 10309866 - 10309769
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||||||| |||| ||||||||||||||||||||||   ||||||| |||| ||||  ||| |||||  ||||||  |||||||||||||||||||    
T  10309866 ttcctttttccctctttattgttattgtccaataaaaaagaaggaaaaaggttatcacccaaaattgtttaaaattgattgtcaaaatatcattcctc 10309769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 44952746 - 44952811
Alignment:
Q  35 aaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||||||| |||| | |||||||||||| |||||||||||||  ||||||||||||||||||||    
T  44952746 aaaaagagagaaaaaagattgtcactaaaaattgttagaaattgattgtcaaaatatcattcctct 44952811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 44712516 - 44712613
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    ||||||||||||||||| |||||  |||||| || ||||||||| ||||||||   ||||||||   ||||||| | | |||||||||||||||||||    
T  44712516 tttttctctctctattgctattgctcaataagaatagaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcctctttt 44712613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 1370369 - 1370411
Alignment:
Q  7 ttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  1370369 ttttctctctctattgttattatccaataaaaagagagaaaaa 1370411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29509350 - 29509398
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||||||||    
T  29509350 cttcctttttctctcttcattgtttttgaccaataaaaagagaggaaaa 29509398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20995045 - 20995002
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||    
T  20995045 cttcctttttctctctctattgtttttgaccaataagaagagag 20995002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23709060 - 23709103
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||    
T  23709060 cttcctttttctctctctattgttcttgaccaatgaaaagagag 23709103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 33415697 - 33415650
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  33415697 ttcctttttctctctctattgtttttgaccaataaaaaaagtggaaaa 33415650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 37792148 - 37792050
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||| |||||||| ||||| ||| || |||||  |||||| |||||| || ||  ||||| | ||| ||||||||||| ||||    
T  37792148 cttcctttttctctctctattattattgtctaataagaag-gaagaaaaaagttgtccctaaaaattatttaaaattagttgtgaaaatatcatttctct 37792050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9001001 - 9000951
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatg 51  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||||    
T  9001001 cttcctttttctctctccattgtttttgaccaatgaaaagagagtaaaatg 9000951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 16700851 - 16700893
Alignment:
Q  7 ttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||| |||||||||||||||| |||||||| ||||||||||||    
T  16700851 ttttatctctctattgttattctccaataagaagagaggaaaa 16700893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25430730 - 25430772
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  25430730 cttcctttttctctctctattgtttttgaccaataagaagaga 25430772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27300430 - 27300472
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  27300430 cttcctttttctctctctattgtttttgaccaataagaagaga 27300472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34838257 - 34838215
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  34838257 cttcctttttctctctctattgtttttgaccaataagaagaga 34838215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 36023186 - 36023268
Alignment:
Q  20 ttgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttt 102  Q
    ||||||||||||||| ||||| |||||||| | |||||||  ||| || ||  ||||||  |||||||||||||||| |||||    
T  36023186 ttgttattgtccaattaaaagggaggaaaaagattgtcacccaaaattatttaaaattgattgtcaaaatatcattcttcttt 36023268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 36015645 - 36015690
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaat 50  Q
    |||||||||||| ||||||| ||| ||||||||||||||| |||||    
T  36015645 ctttttctctctttattgtttttgaccaataaaaagagagaaaaat 36015690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 39031210 - 39031157
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagagag-gaaaatggttgtca 58  Q
    |||||||||||||||| || |||||||||||||| ||||  |||||||||||||    
T  39031210 tttttctctctctattatttttgtccaataaaaatagagaaaaaatggttgtca 39031157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 295630 - 295678
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||| ||||| |||| |||| ||||    
T  295630 cttcctttttctctctctattgtttttgaccaatgaaaatagagaaaaa 295678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 426185 - 426233
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  426185 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 426233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2597147 - 2597099
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  2597147 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 2597099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 5359426 - 5359470
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  5359426 ctttttctctctccattgtttttgaccaataaaaagagagaaaaa 5359470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 14127334 - 14127429
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||| |||||||||||| |  || |||||||| |||||||||||| |||||||||| ||||||||||    ||||| |||  |||||||||||||||    
T  14127334 ctttctctctctctattatatttatccaataagaagagaggaaaagtggttgtcac-aaaagttgtttaggattggttgtacaaatatcattcctct 14127429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22767214 - 22767262
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  22767214 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 22767262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 36497749 - 36497793
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||    
T  36497749 ctttttctctctctattgtttttaaccaataaaaagagagaaaaa 36497793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41273599 - 41273647
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  41273599 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 41273647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41317282 - 41317381
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||||||| ||||| |||||| || |||| |||| | ||||| | ||||||||||  ||||||||||||||||||||||||||||    
T  41317282 cttcctttttctctctctattgtcattgttcaataagaatagagaaaaaagattgtcccaaaaagttgttgaaaattggatgtcaaaatatcattcctct 41317381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4969521 - 4969410
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagagg-aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||| ||||||||||||||||||||||||||||||| || | ||| ||||  |||||||   ||||||||| ||||||||||||||||||||||||| ||    
T  4969521 cttcttttttctctctctattgttattgtccaataagaataaaggaaaaaaagttgtcatccaaagttgtttgaaattggatgtcaaaatatcattcatc 4969422  T
Q  100 tt-ttattatta 110  Q
    || |||||||||    
T  4969421 ttattattatta 4969410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 40210050 - 40210006
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  40210050 ctttttctctctctattgttattgtccaataagaagagaggaaaa 40210006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 15260397 - 15260491
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttt 102  Q
    |||||||||||||| ||||||||||||||||||  || |||| | || || |||||| || ||  ||||||| ||| ||||||||||||||||||    
T  15260397 tttctctctctattattattgtccaataaaaaggaagaaaaaagattatccctaaaaattatttaaaattggttgttaaaatatcattcctcttt 15260491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 36193712 - 36193611
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||| ||||||||||||||||| ||||||||||||| ||  |||||||| | || | |   ||||||||   ||||||| ||||||||||||||||||||    
T  36193712 cttcatttttctctctctattgctattgtccaataagaatggaggaaaaagattataatccaaagttgtctaaaattggttgtcaaaatatcattcctct 36193613  T
Q  101 tt 102  Q
    ||    
T  36193612 tt 36193611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 36003550 - 36003451
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||| ||||||||| |||||||||||||| |||||| ||  ||| ||||  ||||||||  ||| || || ||||||  |||||||||||||||||||||    
T  36003550 cttcttttttctctttctattgttattgttcaataagaatggagaaaaaaagttgtcacccaaaattatttgaaattaaatgtcaaaatatcattcctct 36003451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 7438653 - 7438754
Alignment:
Q  2 ttcctttt-tctctctctattgttattgtccaataaaaagagag-gaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||  |||| ||||||| || |||||||||  |  |||| ||||||||||||| |||||    
T  7438653 ttccttttctctttctctattgttattgtccaatgaaaagagagaaaaaaaggttgtccct-aaagttgttttattttggttgtcaaaatatcactcctc 7438751  T
Q  100 ttt 102  Q
    |||    
T  7438752 ttt 7438754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 32900306 - 32900264
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaat 50  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  32900306 tttctctctctattgttcttatccaataaaaagagaggaaaat 32900264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 37468241 - 37468158
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagagg-aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcat 94  Q
    |||||||||||||||||||||||||||   |||||||| |||| ||||||||| ||||||||||  ||||||| |||  |||||||||    
T  37468241 tttctctctctattgttattgtccaat---aagagaggaaaaaaggttgtcac-aaaagttgtttcaaattggttgtacaaatatcat 37468158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31415202 - 31415154
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||| |||||||||||| |||||| |||||||||||||||||| |||||    
T  31415202 cttcttttttctctctccattgtttttgtccaataaaaagagaagaaaa 31415154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7086111 - 7086068
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||    
T  7086111 cttcctttttctctctctattgtttttgaccaatgaaaagagag 7086068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19523388 - 19523345
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||    
T  19523388 cttcctttttctctctccattgtttttgaccaataaaaagagag 19523345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23344976 - 23344933
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||    
T  23344976 cttcctttttctctctctattgtttttgaccaatgaaaagagag 23344933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38688993 - 38689036
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||||||||||| ||  |||||||||||||||    
T  38688993 cttcctttttctctctctattgtttttaaccaataaaaagagag 38689036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 11084805 - 11084901
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagagagg--aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt 101  Q
    |||||||| ||||||||||||||||| |||| || |||||  ||||  ||||||||| |||||||||  ||||||  |||| |||||| |||||||||    
T  11084805 tttttctccctctattgttattgtccgataagaaaagaggaaaaaaaagttgtcact-aaagttgtttaaaattgattgtccaaatatgattcctctt 11084901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11152686 - 11152644
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||    
T  11152686 cttcctttttctctctatattgtttttgaccaataaaaagaga 11152644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 15610814 - 15610725
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagag-gaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcc 97  Q
    ||||||||||||||||| |||||||||||||| ||||  |||||| ||||||| ||| |||||   ||||||| |||  ||||||||||||    
T  15610814 tttctctctctattgtttttgtccaataaaaatagagaaaaaatgtttgtcac-aaaggttgtacaaaattggttgtacaaatatcattcc 15610725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18508162 - 18508200
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaa 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  18508162 cttcctttttctctctctattgtttttgaccaataaaaa 18508200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 18749346 - 18749308
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  18749346 ctttttctctctctattgtttttgaccaataaaaagaga 18749308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38027602 - 38027560
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  38027602 cttcctttttctctctctattgtttttgaccaataagaagaga 38027560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 40602366 - 40602313
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa--tggttgtcac 59  Q
    ||||||||||||||||| || ||||||||||| |||||||||  ||||||||||    
T  40602366 tttctctctctattgtttttatccaataaaaaaagaggaaaaagtggttgtcac 40602313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 13453935 - 13453878
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcactaaaa 64  Q
    ||||||||||||||| | ||||||||||| ||||||| |||| |||||||||| ||||    
T  13453935 tttctctctctattgattttgtccaataagaagagagaaaaagtggttgtcacaaaaa 13453878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23048070 - 23048006
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  23048070 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 23048006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36383546 - 36383610
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  36383546 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 36383610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6365270 - 6365318
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||| ||||    
T  6365270 cttcctttttctctcttcattgtttttgaccaataaaaagagagaaaaa 6365318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10550446 - 10550398
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| |||||||||| |||| ||||    
T  10550446 cttcctttttctctctccattgtttttgaccaataaaaatagagaaaaa 10550398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10749666 - 10749618
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||| || |||||| ||| |||||| |||||||||||||    
T  10749666 cttcctttttctctttccattgtttttgaccaatagaaagagaggaaaa 10749618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13104563 - 13104611
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  13104563 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 13104611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28165213 - 28165315
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaa--agagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| ||| || ||| |||||||||  |||||| |||| |||||||| | ||||||||||| || ||| |||  |||||| ||| ||    
T  28165213 cttcctttttctctctccattatttttgaccaataaaaagagagagaaaaaaggttgtca-tgaaagttgttagcaaatggttgttcaaatattatttct 28165311  T
Q  99 cttt 102  Q
    ||||    
T  28165312 cttt 28165315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 28481874 - 28481922
Alignment:
Q  12 tctctctattgttattgtccaataaaaagagag-gaaaatggttgtcac 59  Q
    |||| |||||||| |||||||||||||||| || |||||||||||||||    
T  28481874 tctcgctattgtttttgtccaataaaaagatagagaaaatggttgtcac 28481922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30973978 - 30973930
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||| ||||    
T  30973978 cttcctttttctctctccattgtttttgaccaataaaaagtgagaaaaa 30973930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 31629695 - 31629747
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagag-gaaaatggttgtcac 59  Q
    ||||||||||||||||| || |||||||| ||||||| |||| ||||||||||    
T  31629695 tttctctctctattgtttttatccaataagaagagagagaaagtggttgtcac 31629747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32750082 - 32750130
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  32750082 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 32750130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42081121 - 42081169
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||| ||||| |||| |||| ||||    
T  42081121 cttcctttttctctctctattgtttttgaccaatgaaaatagagaaaaa 42081169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44484643 - 44484595
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  44484643 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 44484595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3698398 - 3698498
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||| ||||||||  | ||||||||||||||||||||||||||||||||  ||||||||||||| ||||| |||||| | | |  |||||||||||||||    
T  3698398 cttcttttttctccttttattgttattgtccaataaaaagagaggaaaaaagttgtcactaaaaattgttggaaattagttatgcaaatatcattcctct 3698497  T
Q  101 t 101  Q
    |    
T  3698498 t 3698498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 23719507 - 23719407
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    |||||| ||| ||||||||||||||||||| ||||| ||  | |||||| |||||||| | |||||||||  ||||||| ||||||||||||||||||||    
T  23719507 cttcctctttttctctctattgttattgtcgaataagaaaggcggaaaaaggttgtcattcaaagttgtttcaaattggttgtcaaaatatcattcctct 23719408  T
Q  101 t 101  Q
    |    
T  23719407 t 23719407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 7146114 - 7146070
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7146114 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 7146070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 54128172 - 54128231
Alignment:
Q  42 gaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctt 101  Q
    |||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  54128172 gaggaaaaaggttgtcactaaaagttgtttaaaattggttgtcaaaatatcattcctctt 54128231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 33085245 - 33085339
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattc 96  Q
    |||||||||||||||||||||||||  ||||||||||| | ||||||| | |||||  |||||||| ||  |||||| || ||||||||||||||    
T  33085245 ttcctttttctctctctattgttatcatccaataaaaataaaggaaaaagattgtccataaaagttattgaaaattgaatatcaaaatatcattc 33085339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 50645515 - 50645608
Alignment:
Q  7 ttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatg-tcaaaatatcattcctc 99  Q
    |||| |||||||||||||||| |||||||| || |||| ||||  |||||| ||||||||||||  |||||||||| ||||||||||| |||||    
T  50645515 ttttttctctctattgttattatccaataagaatagagaaaaaaagttgtctctaaaagttgttgaaaattggatgttcaaaatatcaatcctc 50645608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 54342867 - 54342964
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    |||| ||||||||| | ||||||||||||||||||| ||  |||||| | |||||||||  |||||||||  ||||||| |||||| |||||||||||    
T  54342867 cttcttttttctctttgtattgttattgtccaataagaaaggaggaacaaggttgtcacccaaagttgtttaaaattggttgtcaagatatcattcct 54342964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 4272503 - 4272455
Alignment:
Q  52 gttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctct 100  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  4272503 gttgtcactaaaagttgttggaaattggttgtcaaaatatcattcctct 4272455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 54909412 - 54909471
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaa-aatggttgtcactaaa 63  Q
    |||||||||||||||||||||||||||||| |||||||||||| || ||||||| |||||    
T  54909412 ctttttctctctctattgttattgtccaatgaaaagagaggaataaaggttgtccctaaa 54909471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8455987 - 8456035
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  8455987 cttcctttttctctctctattgtttttgaccaataaaaagagagaaaaa 8456035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 51734615 - 51734571
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  51734615 ctttttctctctctattgttattgtccaataagaagagagaaaaa 51734571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 32871809 - 32871715
Alignment:
Q  8 tttctctctctattgttattgtccaataaaaagagaggaaaa-tggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttt 102  Q
    ||||||||||||||||| || ||||||||||||||||||||| || ||||||  || |||||| |  ||||||||||  |||||||| ||||||||    
T  32871809 tttctctctctattgtttttatccaataaaaagagaggaaaagtgattgtca-aaagagttgtcaagaattggatgtacaaatatcactcctcttt 32871715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 54199184 - 54199278
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctc 99  Q
    ||||||||||| |||||| ||||||||||||||||  || ||||| || | ||||  ||| ||||   ||||||| |||||||||||||||||||    
T  54199184 ctttttctctccctattgctattgtccaataaaaatggaagaaaaaggctctcacccaaaattgtctaaaattggttgtcaaaatatcattcctc 54199278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22257183 - 22257114
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag-gaaaatggttgtcactaaaagttgt 69  Q
    |||||||||||||||||||||||| ||  ||||| ||||||||| |||||  |||||||| |||||||||    
T  22257183 cttcctttttctctctctattgtttttaaccaatgaaaagagagagaaaaaagttgtcaccaaaagttgt 22257114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 25467887 - 25467980
Alignment:
Q  9 ttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttt 102  Q
    |||||||| |||||||||  |||||||| || |||| ||||   || || ||||||||||||  |||||| ||||||||||||||||| |||||    
T  25467887 ttctctctttattgttatcatccaataagaatagagaaaaaaaattatccctaaaagttgttgaaaattgcatgtcaaaatatcattcgtcttt 25467980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4550418 - 4550466
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  4550418 cttcctttttctctctccattgtttttgaccaatcaaaagagaggaaaa 4550466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12706249 - 12706297
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||| |||||||||||||||||||||| |||| | ||||||||||||    
T  12706249 cttcctctttctctctctattgttattgttcaattataagagaggaaaa 12706297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31178657 - 31178705
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||| ||||| | ||||||||||||||||||||||||||||| ||||    
T  31178657 cttcctctttctttttctattgttattgtccaataaaaagagagaaaaa 31178705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3475952 - 3476053
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||| |||||||||||||| ||| ||||| |||||| || |||||  ||||||||| ||| ||||| |  || ||| ||||||||||||||| ||    
T  3475952 cttccttttactctctctattgtttttgaccaatgaaaagaaagaaaaataaggttgtcac-aaatgttgtcatcaaatggttgtcaaaatatcattact 3476050  T
Q  99 ctt 101  Q
    |||    
T  3476051 ctt 3476053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 39844244 - 39844197
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    |||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  39844244 ttcctttttctctctccattgtttttgaccaataaaaagagagaaaaa 39844197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 44368189 - 44368088
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat--ggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||| | ||||| ||||||| |||||  |||||||||| |||||||| |  || |||||||  |||||||||| ||    
T  44368189 cttcctttttctctctccattgtttttgacaaataagaagagagaaaaataaggttgtcact-aaagttgtcatgaaatggatgtacaaatatcattgct 44368091  T
Q  99 ctt 101  Q
    |||    
T  44368090 ctt 44368088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45678347 - 45678390
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||    
T  45678347 cttcctttttctctctccattgtttttgaccaataaaaagagag 45678390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 33438134 - 33438172
Alignment:
Q  6 tttttctctctctattgttattgtccaataaaaagagag 44  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  33438134 tttttctctctctattgtttttgaccaataaaaagagag 33438172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 44539379 - 44539421
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagagag 44  Q
    |||||||||||||||| |||||| ||| |||||||||||||||    
T  44539379 ttcctttttctctctccattgtttttgaccaataaaaagagag 44539421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3223073 - 3223137
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  3223073 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaagaaggttgtcactaaa 3223137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5208314 - 5208250
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  5208314 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 5208250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27001396 - 27001332
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  27001396 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 27001332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32365654 - 32365605
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaat 50  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||| |||||    
T  32365654 cttcatttttctctctccattgtttttgaccaataaaaagagagaaaaat 32365605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 50291367 - 50291408
Alignment:
Q  2 ttcctttttctctctctattgttattgtccaataaaaagaga 43  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||    
T  50291367 ttcctttttctctctctattgtttttgaccaataagaagaga 50291408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51377280 - 51377216
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  51377280 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 51377216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4100740 - 4100693
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  4100740 cttcctttttctctctc-attgttcttgaccaataaaaagagagaaaaa 4100693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4896487 - 4896439
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  4896487 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 4896439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8026751 - 8026703
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  8026751 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 8026703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9162150 - 9162198
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||| ||||||||| ||||    
T  9162150 cttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaa 9162198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11064076 - 11064036
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaaga 41  Q
    |||||||||||||||||||||||| ||| || |||||||||    
T  11064076 cttcctttttctctctctattgtttttgaccgataaaaaga 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15515868 - 15515916
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||| ||||    
T  15515868 cttcctttttctctctccattgtttttgaccaataaaaagtgagaaaaa 15515916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 15638218 - 15638262
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||| ||||||||||| ||||||| ||||    
T  15638218 ctttttctctctccattgtttttgtccaataagaagagagaaaaa 15638262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 18874911 - 18874809
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa--tggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcct 98  Q
    ||||||||||||||||| |||||| ||| ||||| | ||||||| ||||   |||||||| ||||||||||||| || ||  |||  |||||||||| ||    
T  18874911 cttcctttttctctctccattgtttttgaccaatgagaagagagaaaaaggaggttgtca-taaaagttgttagcaaatgattgttcaaatatcattgct 18874813  T
Q  99 cttt 102  Q
    ||||    
T  18874812 cttt 18874809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30778251 - 30778203
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||  ||||||||||||||| ||||    
T  30778251 cttcctttttctctctccattgtttttaaccaataaaaagagagaaaaa 30778203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31221497 - 31221545
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  31221497 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 31221545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 32408457 - 32408413
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||| ||| |||||||||||||| |||||    
T  32408457 ctttttctctctccattgtttttgaccaataaaaagagaagaaaa 32408413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 32901417 - 32901461
Alignment:
Q  5 ctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  32901417 ctttttctctctccattgtttttgaccaataaaaagagagaaaaa 32901461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41495097 - 41495145
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  41495097 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 41495145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 54036516 - 54036448
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaatggttgtcactaaaagttgt 69  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||| ||||  |||||||| |||| ||||    
T  54036516 cttcctttttctctctccattgtttttaaccaatgaaaagagagaaaaaaagttgtcaccaaaaattgt 54036448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54165146 - 54165098
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||  |||||| ||| ||||| ||||||||||||||    
T  54165146 cttcctttttctctcttcattgtttttgaccaatcaaaagagaggaaaa 54165098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 6122 - 6028
Alignment:
Q  9 ttctctctctattgttattgtccaataaaaagagagg-aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 103  Q
    |||||||||||||||| || |||||||| |||||||| |||||||||||||| ||| ||||||  |||||||||||  |||||||| |||||||||    
T  6122 ttctctctctattgtttttatccaataagaagagaggaaaaatggttgtcac-aaatgttgtttaaaattggatgtacaaatatcactcctctttt 6028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 3637 - 3540
Alignment:
Q  9 ttctctctctattgttattgtccaataaaaagagagg-aaaatggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctcttttatt 106  Q
    |||||||||||||||| || |||||||| |||||||| ||||||| | |||| ||| ||||||  |||||| ||||  |||||||| ||||||||||||    
T  3637 ttctctctctattgtttttatccaataagaagagaggaaaaatgggtatcac-aaatgttgtttaaaattgaatgtacaaatatcactcctcttttatt 3540  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 147243 - 147179
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaa--atggttgtcactaaa 63  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| |||  | |||||||||||||    
T  147243 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcactaaa 147179  T

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Target: scaffold0576 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9514 - 9562
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||||||    
T  9514 cttcctttttctctctccattgttttttaccaatcaaaagagaggaaaa 9562  T

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Target: scaffold0514 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1483 - 1435
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  1483 cttcctttttctctctccattgtttttgaccaataagaagagagaaaaa 1435  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35480 - 35432
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| ||| || ||| ||||| ||||||||||||||    
T  35480 cttcctttttctctctccattatttttgaccaatcaaaagagaggaaaa 35432  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 204434 - 204386
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||| |||||||||| ||| ||||||| ||||||| ||||    
T  204434 cttcctttttctccctctattgtttttgaccaataagaagagagaaaaa 204386  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 337202 - 337250
Alignment:
Q  1 cttcctttttctctctctattgttattgtccaataaaaagagaggaaaa 49  Q
    ||||||||||||||||| |||||| ||| |||||||||| |||| ||||    
T  337202 cttcctttttctctctccattgtttttgaccaataaaaaaagagaaaaa 337250  T

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