View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_27 (Length: 312)
Name: NF9231_low_27
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 10005541 - 10005832
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
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| T |
10005541 |
gctgaaacaaatggtgacagcttaaacttaacaatctctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
10005640 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
10005641 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggttgcttggcttcctggtagtgaaggttctggtgttgccgatgt |
10005740 |
T |
|
| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
304 |
Q |
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| T |
10005741 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
10005832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 9999393 - 9999684
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
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| T |
9999393 |
gctgaaacaaatggtgacagcttaaacttaacaatctctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
9999492 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
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| T |
9999493 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggatgattggcttcctggtagtgaaggttctggtgttgccgatgt |
9999592 |
T |
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| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
304 |
Q |
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| T |
9999593 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttaccaatgaatgttggtgattctcatt |
9999684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 9992438 - 9992729
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
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|||||||||||||| |||||||| |||||||||||||| || | ||| ||||| ||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
9992438 |
gctgaaacaaatggcgacagcttgaacttaacaatttccggtaacggaacagaaacaataaacaatgtatgcggcagagtgaaatgtgtcgttgtgttag |
9992537 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
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|||| ||||||||| ||| ||||||||||||||| | |||||||| ||||| || |||| |||||||||||||||||||||| |||||||||| ||||| |
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| T |
9992538 |
tcactggtagacctgttgccatacaaccatatcttaacaaaattgacggactcgttgctgcttggcttcctggtagtgaaggtactggtgttgctgatgt |
9992637 |
T |
|
| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
304 |
Q |
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| T |
9992638 |
tttgtttggtgattatggatttactggtaagcttgctaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcatt |
9992729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 10013882 - 10014162
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
| |
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||||||||| |||||||||||||||| || ||| || ||| ||||||| ||||| || | ||||||||| ||| |||||||||||| ||||| |||| |
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| T |
10013882 |
gctgaaacagatggtgacagcttaaatttgacacttcctgcacatggaatagaaacaatcaaaaatgtatgcggcgcagtgaaatgtgttgttgtcttaa |
10013981 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
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|| | || |||||| ||||||||||||||| |||| | || ||||| ||||| || || | |||||||||||||||||||||| |||||||||| ||||| |
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| T |
10013982 |
tctctggaagacctgttgttatacaaccatttcttcacaacattgacggactcgttgcggcttggcttcctggtagtgaaggtactggtgttgctgatgt |
10014081 |
T |
|
| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttgg |
293 |
Q |
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|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||| || ||||||||||| |
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| T |
10014082 |
tttgtttggtgattatggatttactggtaagctttcaaggacatggtttaagactgtccatcagttaccgatgaatgttgg |
10014162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 304
Target Start/End: Complemental strand, 33353383 - 33353243
Alignment:
| Q |
164 |
ttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaa |
263 |
Q |
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|||| ||||||||||| || ||||||||||| ||||| || |||||||| |||||||||||||| || || || || |||||||| |||||||| || |
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| T |
33353383 |
ttgttgctggttggctaccaggtagtgaaggacaaggtgtggctgatgttttatttggtgattatggtttcacaggaaagcttccaagaacatggttcaa |
33353284 |
T |
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| Q |
264 |
gactgttgatcagttgccaatgaatgttggtgattctcatt |
304 |
Q |
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| ||||||||| | |||||||||||||| ||| |||||| |
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| T |
33353283 |
aagtgttgatcaacttccaatgaatgttggagatcctcatt |
33353243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 11244412 - 11244309
Alignment:
| Q |
199 |
ggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgatt |
298 |
Q |
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||||| || |||||| | |||||||| ||||| || || ||||||||| ||||||||||||| || |||| ||||| | |||||||||||||| ||| |
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| T |
11244412 |
ggtgtggcagatgttctttttggtgactatggtttcactggtaaacttgcaaggacatggttcaaatctgtcgatcaactcccaatgaatgttggagatc |
11244313 |
T |
|
| Q |
299 |
ctca |
302 |
Q |
| |
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|||| |
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|
| T |
11244312 |
ctca |
11244309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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