View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_28 (Length: 279)
Name: NF9231_low_28
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 33 - 274
Target Start/End: Complemental strand, 3699097 - 3698854
Alignment:
| Q |
33 |
aaactatttctaa-gcaaatcctaatcacaatataaataaaacacacggatgcataatagcatgaacaactgctaaacaaatgttgttaaaaaactacaa |
131 |
Q |
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| T |
3699097 |
aaactatttctaaagcaaagcc-aatcacaatataaatagaacaca--gatgcagaatagcatgaacaactgctaaacaaatgttgttaaaaaattacaa |
3699001 |
T |
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| Q |
132 |
gtgaacattaaaatagcttttcaatttgagttgcggcttagactaattctactgttactattctcttcatt----gtaacaaccatatttcaaactatag |
227 |
Q |
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| T |
3699000 |
gtgaacattaaaatagcttttcaatttgagttgcggcttagactaattctactgttactattctcttcattgctggtaacaaccgtattgtaaactatag |
3698901 |
T |
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| Q |
228 |
caaactaacaaggataatgagttatttaccccttgatgtccatctca |
274 |
Q |
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| T |
3698900 |
caaactaacaaggataatgagttatttaccccttggtgtccatctca |
3698854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 3703877 - 3703777
Alignment:
| Q |
9 |
acatgatacaaagggacgatgcagaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataatagcatgaacaactgctaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703877 |
acatgatacaaagggacgatgcagaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataatagcatgaacaactgctaaa |
3703778 |
T |
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| Q |
109 |
c |
109 |
Q |
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| T |
3703777 |
c |
3703777 |
T |
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