View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9231_low_3 (Length: 704)

Name: NF9231_low_3
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9231_low_3
NF9231_low_3
[»] chr4 (31 HSPs)
chr4 (1-687)||(49040627-49041315)
chr4 (4-687)||(48863144-48863848)
chr4 (583-687)||(48898634-48898738)
chr4 (351-410)||(50250602-50250661)
chr4 (148-226)||(7790441-7790519)
chr4 (148-226)||(7908663-7908741)
chr4 (333-410)||(48705195-48705272)
chr4 (148-232)||(7878738-7878822)
chr4 (573-625)||(45384905-45384957)
chr4 (115-227)||(49038467-49038579)
chr4 (336-444)||(49044005-49044113)
chr4 (40-227)||(48147227-48147414)
chr4 (156-227)||(48864395-48864466)
chr4 (485-535)||(48898786-48898836)
chr4 (150-227)||(48156053-48156130)
chr4 (575-616)||(49044226-49044267)
chr4 (148-232)||(7773447-7773531)
chr4 (573-621)||(48147754-48147802)
chr4 (573-625)||(48705396-48705448)
chr4 (378-410)||(48852855-48852887)
chr4 (573-623)||(48735419-48735469)
chr4 (582-620)||(48852663-48852701)
chr4 (148-221)||(7771761-7771834)
chr4 (571-620)||(48170597-48170646)
chr4 (583-620)||(48870539-48870576)
chr4 (575-620)||(48875843-48875888)
chr4 (583-620)||(48886225-48886262)
chr4 (643-687)||(48852578-48852622)
chr4 (169-281)||(48852987-48853099)
chr4 (577-625)||(48902924-48902972)
chr4 (576-620)||(49048613-49048657)
[»] chr5 (5 HSPs)
chr5 (23-687)||(42561827-42562491)
chr5 (494-625)||(29696198-29696329)
chr5 (327-410)||(29696404-29696487)
chr5 (577-625)||(179026-179074)
chr5 (246-282)||(29712167-29712203)
[»] chr1 (13 HSPs)
chr1 (34-529)||(24340466-24340967)
chr1 (34-529)||(24352831-24353332)
chr1 (42-687)||(24310098-24310761)
chr1 (27-529)||(24367205-24367725)
chr1 (33-558)||(24415804-24416332)
chr1 (392-620)||(24369477-24369704)
chr1 (156-227)||(24369801-24369872)
chr1 (246-430)||(24322923-24323104)
chr1 (561-687)||(24367077-24367203)
chr1 (571-687)||(24340338-24340454)
chr1 (571-687)||(24352703-24352819)
chr1 (454-518)||(24322835-24322900)
chr1 (24-64)||(24369906-24369946)
[»] chr6 (2 HSPs)
chr6 (336-409)||(21979447-21979520)
chr6 (378-445)||(21015963-21016030)
[»] chr3 (4 HSPs)
chr3 (337-418)||(47451717-47451798)
chr3 (642-687)||(47452022-47452067)
chr3 (560-620)||(11005977-11006037)
chr3 (560-620)||(11024552-11024612)
[»] chr7 (1 HSPs)
chr7 (169-221)||(30119911-30119963)
[»] chr8 (1 HSPs)
chr8 (344-406)||(4031727-4031789)


Alignment Details
Target: chr4 (Bit Score: 649; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 1 - 687
Target Start/End: Original strand, 49040627 - 49041315
Alignment:
Q  1 tataaagtcatttggaatcctggtgcatcttcacaataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49040627 tataaagtcatttggaatcctggtgcatcttcacaataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttg 49040726  T
Q  101 atgcaacaatattgccactttttgtacagcatataggggaaaggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49040727 atgcaacaatattgccactttttgtacagcatataggggaaaggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactcc 49040826  T
Q  201 atattcttccatcacccatatatcaaccgtatgatcccccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49040827 atattcttccatcacccatatatcaaccgtatgatcccccgaaacccatagactgagaaatcctttaaatacccataaatcacgatcattagaatcattt 49040926  T
Q  301 tcaatatcatctgggagaggtatcaatagaaattcccttt-ctattaaatgaaagg-caacaataacataaacacatatatcatgacgaaaagccaacca 398  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49040927 tcaatatcatctgggagaggtatcaatagaagttccctttcctattaaatgaaaggacaacaataacataaacacatatatcatgacgaaaagccaacca 49041026  T
Q  399 atgaatagccccgttgaagaacgagtctaccatgggataataagaggaaacgaccttactacaaaaaggccaatgggtagtacccacaatttccttccac 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49041027 atgaatagccccgttgaagaacgagtctaccatgggataataagaggaaacgaccttactacaaaaaggccaatggatagtacccacaatttccttccac 49041126  T
Q  499 acattagctttcaatgagaaaatctccaagtgggatagcatgtcatctgagttcggaatactatcatacgatactgaaaccatcaagtaatcatctgttg 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041127 acattagctttcaatgagaaaatctccaagtgggatagcatgtcatctgagttcggaatactatcatacgatactgaaaccatcaagtaatcatctgttg 49041226  T
Q  599 acggatcatacccaaaaccatagaaatttaagtaataatcattaggaggcaaaggtattagtttgtgagctccggtggatgggttccat 687  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041227 acggatcatacccaaaaccatagaaatttaagtaatcatgattaggaggcaaaggtattagtttgtgagctccggtggatgggttccat 49041315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 4 - 687
Target Start/End: Complemental strand, 48863848 - 48863144
Alignment:
Q  4 aaagtcatttggaatcctggtgcatcttcacaataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatg 103  Q
    |||||||||| | ||||  |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48863848 aaagtcattttggatccccgtgcatcttcatcataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatccagccatttgatg 48863749  T
Q  104 caacaatattgccactttttgtacagcatataggggaaaggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccata 203  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||    
T  48863748 caacaatattgccactttttgtacaacatatggggtaaaggtagggaaaggcatcaatagaaagcacaagagttttaatccaagatgaatgcactccgta 48863649  T
Q  204 ttcttccatcacccatatatcaaccgtatgatcccccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcat-------------- 289  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||                  
T  48863648 ttcttccatcacccatatgtcaaccttatgatcccccgaaacccatagactgagagatcctctaaatacccataaatcacgatcattagaatgattgtga 48863549  T
Q  290 -------tagaatcattttcaatatcatctgggagaggtatcaatagaaattccctttctattaaatgaaaggcaacaataacataaacacatatatcat 382  Q
           |||||| ||  | |||||||||| |||||||||||||||||| |||||||||  ||||| |||||||||||||||||||||||| ||||||||    
T  48863548 atatcattagaatgatcgtgaatatcatctaggagaggtatcaatagaagttccctttccgttaaacgaaaggcaacaataacataaacacctatatcat 48863449  T
Q  383 gacgaaaagccaaccaatgaatagccccgttgaagaacgagtctaccatgggataataagaggaaacgaccttactacaaaaaggccaatgggtagtacc 482  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  48863448 gacgaaaagccaaccaatgaatagccccgttgaagaaggagtctaccatgggataataagaggaaacaatcttactacaataaggccaatgggtagtacc 48863349  T
Q  483 cacaatttccttccacacattagctttcaatgagaaaatctccaagtgggatagcatgtcatctgagttcggaatactatcatacgatactgaaaccatc 582  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  48863348 cacagtttccttccacacattagctttcaatgtgaaaatctccaagtgggatagcttgtcatctgagtttggaatactatcatacgatactgaaaccacc 48863249  T
Q  583 aagtaatcatctgttgacggatcatacccaaaaccatagaaatttaagtaataatcattaggaggcaaaggtattagtttgtgagctccggtggatgggt 682  Q
    ||||||||||||  |||||||||||||||||||||   ||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||| |    
T  48863248 aagtaatcatcttctgacggatcatacccaaaaccggcgaaatttaaataataatcattaggaggcgaaggtatttgtttctgagctccggtggatggat 48863149  T
Q  683 tccat 687  Q
    |||||    
T  48863148 tccat 48863144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 583 - 687
Target Start/End: Complemental strand, 48898738 - 48898634
Alignment:
Q  583 aagtaatcatctgttgacggatcatacccaaaaccatagaaatttaagtaataatcattaggaggcaaaggtattagtttgtgagctccggtggatgggt 682  Q
    ||||||||||||||| || |||||||||||||||||||||||| |||  || ||| |||||||| |||||||||| |||||||||||||||||||||| |    
T  48898738 aagtaatcatctgttaactgatcatacccaaaaccatagaaatataaagaaaaatgattaggagacaaaggtatttgtttgtgagctccggtggatggat 48898639  T
Q  683 tccat 687  Q
    |||||    
T  48898638 tccat 48898634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 50250602 - 50250661
Alignment:
Q  351 aaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagcccc 410  Q
    |||||||||||||||||| ||  ||| ||||| |||||||||||||||||||||||||||    
T  50250602 aaaggcaacaataacatagaccaataaatcataacgaaaagccaaccaatgaatagcccc 50250661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 7790519 - 7790441
Alignment:
Q  148 ggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaa 226  Q
    |||||||||||||||| ||| |||||| ||||| ||||||| |||||||||   ||||||| |||||||||||| ||||    
T  7790519 ggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 7908741 - 7908663
Alignment:
Q  148 ggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaa 226  Q
    ||||||||||||| || ||| |||||| ||||| |||||||||||||||||   ||||||| |||||||||||| ||||    
T  7908741 ggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 48705195 - 48705272
Alignment:
Q  333 ttccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagcccc 410  Q
    ||||||||| ||||||| |||||||||||||||||     | || |||||||||| ||||||||||||||||||||||    
T  48705195 ttccctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagcccc 48705272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 7878822 - 7878738
Alignment:
Q  148 ggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtat 232  Q
    |||||| ||||||  | ||| |||||| |||||||||||||||||||||||   ||||||| |||||||||||| ||||| ||||    
T  7878822 ggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtat 7878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 45384905 - 45384957
Alignment:
Q  573 tgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaat 625  Q
    |||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||    
T  45384905 tgaaaccaccaaataatcatttgttgactgatcatacccaaaaccatagaaat 45384957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 49038467 - 49038579
Alignment:
Q  115 ccactttttgtacagcatataggggaaaggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatca 214  Q
    |||||||||||||| ||||||||||||| ||| |||||| ||  |||||  || |||||| | ||| ||||||| ||||| |||   ||||||| |||||    
T  49038467 ccactttttgtacaacatataggggaaaagtagggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatca 49038566  T
Q  215 cccatatatcaac 227  Q
    ||||||| |||||    
T  49038567 cccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 444
Target Start/End: Original strand, 49044005 - 49044113
Alignment:
Q  336 cctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtctaccatggga 435  Q
    |||||| ||||||| |||||||||||||||||  |   ||| |||| || ||||||||||||| ||||||||||| || |||| |||  ||||||||| |    
T  49044005 cctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgaccctaccatggaa 49044104  T
Q  436 taataagag 444  Q
    |||| ||||    
T  49044105 taatcagag 49044113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 48147227 - 48147414
Alignment:
Q  40 gagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgtacagcatatagggg 139  Q
    |||||||||||||||| || ||||||||| ||||| |||| || | || |    ||||||| | ||| ||| |  |||||||||||  ||||||||||||    
T  48147227 gagttatgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatatagggg 48147326  T
Q  140 aaaggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaac 227  Q
    ||| ||| |||||| |||||||||  |    |||| | ||| ||||||| |||||||||   ||||||| |||||||||||| |||||    
T  48147327 aaaagtagggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  156 atcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaac 227  Q
    |||||||||||| |||||||| ||| ||||||| |||||||||   ||||||| |||||||||||| |||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 48898836 - 48898786
Alignment:
Q  485 caatttccttccacacattagctttcaatgagaaaatctccaagtgggata 535  Q
    |||||||||||||||||||| || |||||||||||| ||||||||| ||||    
T  48898836 caatttccttccacacattatctctcaatgagaaaaactccaagtgtgata 48898786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 48156053 - 48156130
Alignment:
Q  150 aatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaac 227  Q
    |||| ||||||||||||| |||||| ||||| ||||||| |||||||||   ||||| | |||||||||||| |||||    
T  48156053 aatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaac 48156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 616
Target Start/End: Original strand, 49044226 - 49044267
Alignment:
Q  575 aaaccatcaagtaatcatctgttgacggatcatacccaaaac 616  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  49044226 aaaccaccaaataatcatctgttgacggatcatacccaaaac 49044267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 7773447 - 7773531
Alignment:
Q  148 ggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtat 232  Q
    |||||||| |||| || ||| ||||||  |||||||||||| |||||||||   ||||||| |||||||||||| ||||| ||||    
T  7773447 ggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtat 7773531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 48147754 - 48147802
Alignment:
Q  573 tgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatag 621  Q
    |||||||| |||||||||||||||| || | ||||||||||||||||||    
T  48147754 tgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccatag 48147802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 48705396 - 48705448
Alignment:
Q  573 tgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaat 625  Q
    |||||| | ||||||||||||||||||| ||||||| |||||||||| |||||    
T  48705396 tgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccatggaaat 48705448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 48852887 - 48852855
Alignment:
Q  378 atcatgacgaaaagccaaccaatgaatagcccc 410  Q
    |||||||||||||||||||||||||||||||||    
T  48852887 atcatgacgaaaagccaaccaatgaatagcccc 48852855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 48735419 - 48735469
Alignment:
Q  573 tgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaa 623  Q
    |||||||| |||||||||||||||| |  | ||||||||||||||||||||    
T  48735419 tgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccatagaa 48735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 620
Target Start/End: Complemental strand, 48852701 - 48852663
Alignment:
Q  582 caagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  48852701 caagtaatcatcggttgacgggtcatacccaaaaccata 48852663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 7771834 - 7771761
Alignment:
Q  148 ggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatat 221  Q
    ||||||||||||| || ||| |||||| ||||| |||| || |||||||||   ||||||| ||||||||||||    
T  7771834 ggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 48170597 - 48170646
Alignment:
Q  571 actgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    ||||||||||  |||||||||||| || || |||||||||||||||||||    
T  48170597 actgaaaccactaagtaatcatctcttaactgatcatacccaaaaccata 48170646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 620
Target Start/End: Complemental strand, 48870576 - 48870539
Alignment:
Q  583 aagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    ||||||||||||||| || |||||||||||||||||||    
T  48870576 aagtaatcatctgttaactgatcatacccaaaaccata 48870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 620
Target Start/End: Complemental strand, 48875888 - 48875843
Alignment:
Q  575 aaaccatcaagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    |||||| |||||||||||||| | || |||||||||||||||||||    
T  48875888 aaaccaccaagtaatcatctgctaactgatcatacccaaaaccata 48875843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 620
Target Start/End: Complemental strand, 48886262 - 48886225
Alignment:
Q  583 aagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    ||||||||||||||| || |||||||||||||||||||    
T  48886262 aagtaatcatctgttaactgatcatacccaaaaccata 48886225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 643 - 687
Target Start/End: Complemental strand, 48852622 - 48852578
Alignment:
Q  643 ggaggcaaaggtattagtttgtgagctccggtggatgggttccat 687  Q
    |||| |||||||||| |||||||| ||||||||||||| ||||||    
T  48852622 ggagacaaaggtatttgtttgtgaactccggtggatggattccat 48852578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 48853099 - 48852987
Alignment:
Q  169 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatgatcccccgaaatccatagactgagaaatcctctaa 268  Q
    |||||| | ||| ||||||| ||| |||||   ||||||| ||| |||||||| ||||| |||| |||||||   | ||||| ||| |||||| ||||||    
T  48853099 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatgacccatatacttagaaattctctaa 48853000  T
Q  269 atacccataaatc 281  Q
    ||||||| |||||    
T  48852999 atacccacaaatc 48852987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 577 - 625
Target Start/End: Complemental strand, 48902972 - 48902924
Alignment:
Q  577 accatcaagtaatcatctgttgacggatcatacccaaaaccatagaaat 625  Q
    |||||||||||||||||| ||||  | ||||||||||||||||| ||||    
T  48902972 accatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaat 48902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 576 - 620
Target Start/End: Original strand, 49048613 - 49048657
Alignment:
Q  576 aaccatcaagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    ||||| ||| |||||||||||||| || |||||||||||||||||    
T  49048613 aaccaccaaataatcatctgttgatgggtcatacccaaaaccata 49048657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 23 - 687
Target Start/End: Original strand, 42561827 - 42562491
Alignment:
Q  23 gtgcatcttcacaataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttt 122  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||  |||  |||| || | ||| |||||  ||| ||||    
T  42561827 gtgcatcttcacaataggagttatgctctagaaactcccctttgtcgttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttt 42561926  T
Q  123 tgtacagcatataggggaaaggtatggaatggcatca---ataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccat 219  Q
    |||| || ||| |||| ||| ||| |||||| |||||   |||||||| |||||||| ||| |||||||||||||||||   ||||||| ||||||||||    
T  42561927 tgtataggataaagggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccat 42562026  T
Q  220 atatcaaccgtatgatcccccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcattttcaatatcatctgggagag 319  Q
    ||||||||  |||  |||| | |||||||||||||||||||||||||||||||||| ||| ||| | | || |||| ||  | |||||||  ||| |||     
T  42562027 atatcaacattatcgtccctcaaaatccatagactgagaaatcctctaaatacccaaaaaccacaacctttggaattataattaatatcaattggaagaa 42562126  T
Q  320 gtatcaatagaaattccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaa 419  Q
    | |||  ||||| || ||||||  ||||||||||||||||||||||||   || ||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  42562127 gaatctctagaagtttcctttccgttaaatgaaaggcaacaataacatggtcatatatatcatgacgaagagccaaccagtgaatagccccattgaagaa 42562226  T
Q  420 cgagtctaccatgggataataagaggaaacgaccttactacaaaaaggccaatgggtagtacccacaatttccttccacacattagctttcaatgagaaa 519  Q
    ||| |||||  | |   ||  | |||||  ||| ||| || |||||||| ||||||| ||||   ||||||||||||||||| ||||| ||||| |||||    
T  42562227 cgactctac--ttgtcgaacca-aggaagagacattagtataaaaaggcaaatgggttgtacatgcaatttccttccacacagtagctctcaataagaaa 42562323  T
Q  520 atctccaagtgggatagcatgtcatctgagttcggaatactatcatacgatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccat 619  Q
    | |  |||||| ||||| |  ||||||||||  |||||   ||||   || | ||||||||  || ||||||| ||||||  ||||||||||||||||||    
T  42562324 agccacaagtgagatagaacatcatctgagtatggaatttgatcacgggaaattgaaaccactaaataatcatttgttgagtgatcatacccaaaaccat 42562423  T
Q  620 agaaatttaagtaataatcattaggaggcaaaggtattagtttgtgagctccggtggatgggttccat 687  Q
    | ||||| ||   ||||||| |||||| |||||||||| ||||||||  |||| ||||||| ||||||    
T  42562424 ataaattaaaaatataatcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccat 42562491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 494 - 625
Target Start/End: Complemental strand, 29696329 - 29696198
Alignment:
Q  494 tccacacattagctttcaatgagaaaatctccaagtgggatagcatgtcatctgagttcggaatactatcatacgatactgaaaccatcaagtaatcatc 593  Q
    |||||||||||||| |||||||||||||  ||||||| ||||||||  |||||||| ||||| |    ||||| || | ||||| || ||||||||||||    
T  29696329 tccacacattagctctcaatgagaaaattcccaagtgagatagcataccatctgagctcggactcggttcataggacattgaaatcaccaagtaatcatc 29696230  T
Q  594 tgttgacggatcatacccaaaaccatagaaat 625  Q
    |||||||   ||||||||||||||||||||||    
T  29696229 tgttgactcgtcatacccaaaaccatagaaat 29696198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 29696487 - 29696404
Alignment:
Q  327 tagaaattccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagcccc 410  Q
    ||||| || |||||| ||||||||||||||||||||||||   |   ||||||||| ||||||||||||||| |||||||||||    
T  29696487 tagaagtttcctttcaattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagcccc 29696404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 625
Target Start/End: Complemental strand, 179074 - 179026
Alignment:
Q  577 accatcaagtaatcatctgttgacggatcatacccaaaaccatagaaat 625  Q
    |||| |||||||||||||||||||   ||||||||||||||||||||||    
T  179074 accaacaagtaatcatctgttgactcctcatacccaaaaccatagaaat 179026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 29712167 - 29712203
Alignment:
Q  246 ccatagactgagaaatcctctaaatacccataaatca 282  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29712167 ccatagactgagacatcctctaaatacccataaatca 29712203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 1e-40; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 34 - 529
Target Start/End: Complemental strand, 24340967 - 24340466
Alignment:
Q  34 caataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgtacagcata 133  Q
    |||||| || ||||||||| |||||||||||  |||| |||| |||||| |||| ||| || || || | |||||||||  |||||| ||||||| ||||    
T  24340967 caatagtaggtatgctctaaaaactctccttcctcatcatatctcaccaatccagtacggctatctgttccaacaatatcaccacttgttgtacaacata 24340868  T
Q  134 taggggaaaggtatggaatggcatcaa---taggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgt 230  Q
     | ||||||  |   |||||| ||||    ||| ||| |||||| ||||| |||||||||| ||||||  |||||||| ||| ||||| |||||||||||    
T  24340867 caagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgt 24340768  T
Q  231 atg---atcccccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcattttcaatatcatctgggagaggtatcaat 327  Q
    ||    |||| ||  || ||||||||| |||||||||||| ||||||||||| ||| | |  || || |||  |||| ||||||||||||||| |||  |    
T  24340767 atcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctct 24340668  T
Q  328 agaaattccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtcta 427  Q
    | || || |||||| | ||| | ||||||||||| || |||  ||  | |||||| |   ||||||||||| |||||||| |||||||||| ||| ||||    
T  24340667 acaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagccaaccagtgaatagctccgttgaagaccgactcta 24340568  T
Q  428 ccatgggataataagaggaaacgaccttactacaaaaaggccaatgggtagtacccacaatttccttccacacattagctttcaatgagaaaatctccaa 527  Q
    | | |||||||  | ||| |  |  |||||||||||||||| |||||||||  | ||||||||| |||||| |||||||| |||||||||||||| ||||    
T  24340567 ctaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaa 24340468  T
Q  528 gt 529  Q
    ||    
T  24340467 gt 24340466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 34 - 529
Target Start/End: Complemental strand, 24353332 - 24352831
Alignment:
Q  34 caataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgtacagcata 133  Q
    |||||| || ||||||||| |||||||||||  |||| |||| |||||| |||| ||| || || || | |||||||||  |||||| ||||||| ||||    
T  24353332 caatagtaggtatgctctaaaaactctccttcctcatcatatctcaccaatccagtacggctatctgttccaacaatatcaccacttgttgtacaacata 24353233  T
Q  134 taggggaaaggtatggaatggcatcaa---taggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgt 230  Q
     | ||||||  |   |||||| ||||    ||| ||| |||||| ||||| |||||||||| ||||||  |||||||| ||| ||||| |||||||||||    
T  24353232 caagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgt 24353133  T
Q  231 atg---atcccccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcattttcaatatcatctgggagaggtatcaat 327  Q
    ||    |||| ||  || ||||||||| |||||||||||| ||||||||||| ||| | |  || || |||  |||| ||||||||||||||| |||  |    
T  24353132 atcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctct 24353033  T
Q  328 agaaattccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtcta 427  Q
    | || || |||||| | ||| | ||||||||||| || |||  ||  | |||||| |   ||||||||||| |||||||| |||||||||| ||| ||||    
T  24353032 acaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagccaaccagtgaatagctccgttgaagaccgactcta 24352933  T
Q  428 ccatgggataataagaggaaacgaccttactacaaaaaggccaatgggtagtacccacaatttccttccacacattagctttcaatgagaaaatctccaa 527  Q
    | | |||||||  | ||| |  |  |||||||||||||||| |||||||||  | ||||||||| |||||| |||||||| |||||||||||||| ||||    
T  24352932 ctaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctcaatgagaaaatccccaa 24352833  T
Q  528 gt 529  Q
    ||    
T  24352832 gt 24352831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 42 - 687
Target Start/End: Complemental strand, 24310761 - 24310098
Alignment:
Q  42 gttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgtacagcatataggggaa 141  Q
    |||||||||||| ||||| |||| || || |||| |||||| |||| |||| |||| || | |||||||||  |||||||||||||| |||| | |||||    
T  24310761 gttatgctctaggaactccccttcgttatcatatctcaccaatccagtacatccatctgttccaacaatatcaccactttttgtacaacatacaagggaa 24310662  T
Q  142 aggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatgatc---cc 238  Q
    | ||| | ||||| ||  | |  ||  |||||| ||||| ||||||| || ||||||   ||||||| ||||||||||||||||||  |||  ||   ||    
T  24310661 atgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatcctcgtccc 24310562  T
Q  239 ccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcattttcaatatcatc------------tgggagaggtatcaa 326  Q
     |  || ||||||||||||||||||||||||||||||||||  || |||  | ||| ||| ||||||||||||            ||||||||| ||       
T  24310561 tcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatgatcatctgggagaggaatttc 24310462  T
Q  327 tagaaattccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtct 426  Q
    ||||| |  |||||| ||||||||||||| ||||||||||||  | |||| ||||||||||| ||||||||| ||||||||||| |||||||  || |||    
T  24310461 tagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaagacggactct 24310362  T
Q  427 accatgggataa-taagaggaaacgaccttactacaaaaaggccaatgggtagtacccacaatttccttccacacattagctttcaatgagaaaatctcc 525  Q
    ||||  | ||||  || |||| |  | || |||| |||||||  |||| | || || ||||||||| || |||||||||||| ||| ||| ||||||       
T  24310361 accacagaataagcaaaaggaga-aagctcactataaaaaggtaaatgtgcaggactcacaatttcgttgcacacattagctctcattgaaaaaatccaa 24310263  T
Q  526 aagtgggatagcatgtcatctgagttcggaatactatcatacgatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaat 625  Q
    | | | |||||||  |||| |||||  ||||||| |||||| |||||| |||| | ||||||||||||| |||||   ||||| ||||||||||||||||    
T  24310262 atgcgagatagcacatcatgtgagtatggaatacaatcataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccatagaaat 24310163  T
Q  626 ttaa--gt-aataatcattaggaggcaaaggtattagtttgtgagctccggtggatgggttccat 687  Q
    ||||  || ||||||    ||||||| |||||||| || | ||| ||||||||||||| ||||||    
T  24310162 ttaaacgtgaataattgggaggaggcgaaggtatttgtctatgaactccggtggatggattccat 24310098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 27 - 529
Target Start/End: Complemental strand, 24367725 - 24367205
Alignment:
Q  27 atcttcacaataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgta 126  Q
    ||||| ||||||  |||||||||| ||||||||||||| ||| | |||||| | || |||| |||  | ||||| | ||| |||||  ||| ||||||||    
T  24367725 atctttacaataatagttatgctcaagaaactctccttcgtcgtcatattttatcaatccagtacgactatttgttccaataatatcaccagtttttgta 24367626  T
Q  127 cagcatataggggaaaggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaa 226  Q
    || ||||||||| ||| |   ||||||| ||| ||||  || |||||| ||||| ||||||| |||||||||   ||||||||||| |||||||||| ||    
T  24367625 caacatatagggaaaatgcgaggaatggtatccatagttagaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatatataaa 24367526  T
Q  227 ccgtatgatcccccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcatttt---caat---atcatctgggagagg 320  Q
      ||||    || | ||| |||||||||||||||||||||||||||||||||| |  | ||   | ||||||  |   ||||   |||| ||||||||||    
T  24367525 gtgtatctctcctcaaaacccatagactgagaaatcctctaaatacccataaaccctggtctgaaaaatcatcatagtcaattatatcaactgggagagg 24367426  T
Q  321 tatcaatagaaattccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaac 420  Q
     ||    |||| || |||||| |||||| ||||||||||||||||||  |||| |||||||| |||||||| |||||| ||||||||||| |  ||||      
T  24367425 aatatcgagaagtttcctttccattaaaagaaaggcaacaataacattgacacgtatatcataacgaaaagtcaaccagtgaatagccccatgaaagagt 24367326  T
Q  421 gagtctaccatgggataat------aagaggaaacg------accttactacaaaaaggccaatgggtagtacccacaatttccttccacacattagctt 508  Q
    |  ||||| | |||||||       ||||||||  |      |||| ||||||||||| | ||||||||||||||||| |||| |||||| ||||||||     
T  24367325 gtctctactacgggataaacaatggaagaggaagagggagaaacctcactacaaaaagccaaatgggtagtacccacagtttcattccacgcattagctc 24367226  T
Q  509 tcaatgagaaaatctccaagt 529  Q
    |||||||||||||| ||||||    
T  24367225 tcaatgagaaaatccccaagt 24367205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 33 - 558
Target Start/End: Complemental strand, 24416332 - 24415804
Alignment:
Q  33 acaataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgtacagcat 132  Q
    ||||||| || ||||||||||||||||||||| || || |||| | | || | |||||| || | ||| | |||||||||  |||||||||||||| ||     
T  24416332 acaatagtaggtatgctctagaaactctccttcgttatcatatctaatcaatacaatacggcaacttgttccaacaatatcaccactttttgtacaacaa 24416233  T
Q  133 ataggggaaaggtatggaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtat 232  Q
    || ||||||| |   ||||||| ||| ||    || |||||| ||||| |||||||||| ||| ||   ||||||| ||||||||||||||||||  |||    
T  24416232 atgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctat 24416133  T
Q  233 gatc---ccccgaaatccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcattttcaatatcatctgggagaggtatcaatag 329  Q
      |    || | ||| ||||||||||||||||||||||||||||||||||  |  |||  ||||   |  ||||||||||  ||||||||| |||  |||    
T  24416132 ccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaatatcacttgggagaggaatctctag 24416033  T
Q  330 aaattccctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtctacc 429  Q
    || || ||||||  |||||||||||||  ||| ||   || |   ||| |||||||| ||||| ||||||||||||||||| ||||||| ||| ||||||    
T  24416032 aagtttcctttccgttaaatgaaaggctgcaacaaagaaatc---tatctcatgacggaaagctaaccaatgaatagccccattgaagaccgactctacc 24415936  T
Q  430 atgggataataaga----ggaaacg--accttactacaaaaaggccaatgggtagtacccacaatttccttccacacattagctttcaatgagaaaatct 523  Q
    |  ||||||| |||    | | |||  |||| | |||||   ||| ||||||||| || ||||||||| ||||||||||||||| ||||||||||||||     
T  24415935 acaggataatcagaaccagaacacgggacctcaatacaa---ggcaaatgggtaggactcacaatttcgttccacacattagctctcaatgagaaaatcc 24415839  T
Q  524 ccaagtgggatagcatgtcatctgagttcggaata 558  Q
     |||| | |||||||  ||||||||||| ||||||    
T  24415838 tcaagcgagatagcacatcatctgagtttggaata 24415804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 392 - 620
Target Start/End: Complemental strand, 24369704 - 24369477
Alignment:
Q  392 ccaaccaatgaatagccccgttgaagaacgagtctaccatgggataataagaggaaacgaccttactacaaaaaggccaatgggtagtacccacaatttc 491  Q
    ||||||| ||||||||||| ||||| | ||| ||||| | |||| ||| | |||||  ||||  || | |||||||| || |||||||| ||||||||||    
T  24369704 ccaaccagtgaatagccccattgaaaagcgattctactacgggacaatcaaaggaagagacccgaccataaaaaggcaaacgggtagtatccacaatttc 24369605  T
Q  492 cttccacacattagctttcaatgagaaaatctccaagtgggatagcatgtcatctgagttcggaatactatcatacgatactgaaaccatcaagtaatca 591  Q
    ||||||||||||||||  |||||| |||||| |||| ||||||| ||  |||| |||  | ||||||  |||||| ||||||||||||| || |||||||    
T  24369604 cttccacacattagctcacaatga-aaaatcgccaaatgggatatcacatcatatgaacttggaatataatcataggatactgaaaccaccaggtaatca 24369506  T
Q  592 tctgttgacggatcatacccaaaaccata 620  Q
    |||||||||   ||||| |||||||||||    
T  24369505 tctgttgactcgtcatagccaaaaccata 24369477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 24369872 - 24369801
Alignment:
Q  156 atcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaac 227  Q
    |||||||  ||| |||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||||    
T  24369872 atcaatactaagaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaac 24369801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 246 - 430
Target Start/End: Complemental strand, 24323104 - 24322923
Alignment:
Q  246 ccatagactgagaaatcctctaaatacccataaatcacgatcattagaatcattttcaatatcatctgggagaggtatcaatagaaattccctttctatt 345  Q
    |||||||||| ||||||||||||||||||||||| ||  ||| || ||| |||   ||||||||||| ||| ||| |||  || |||||  ||||| |||    
T  24323104 ccatagactgggaaatcctctaaatacccataaaccataatctttcgaaacat---caatatcatctaggaaaggaatctctacaaattttctttccatt 24323008  T
Q  346 aaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtctacca 430  Q
    | || |||||||||| ||| |||  ||  |  |||| |||  ||||||||||| ||||||||||||||||||| ||| |||||||    
T  24323007 agatcaaaggcaacagtaagatactcatgtgcatcaggacttaaagccaaccagtgaatagccccgttgaagaccgactctacca 24322923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 687
Target Start/End: Complemental strand, 24367203 - 24367077
Alignment:
Q  561 atcatacgatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaatttaagtaataatcattaggaggcaaaggtattagt 660  Q
    |||||| ||||  ||||||| |||||||||||||||||||   |||||||||||||||||||||| |   ||  ||| |||| |||||||||||| | |     
T  24367203 atcataggataacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccatagaaatctgcatataaatgattaagaggcaaaggtaattgc 24367104  T
Q  661 ttgtgagctccggtggatgggttccat 687  Q
     | ||| ||| ||||||||||||||||    
T  24367103 ctatgaactctggtggatgggttccat 24367077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 687
Target Start/End: Complemental strand, 24340454 - 24340338
Alignment:
Q  571 actgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaatttaagtaataatcattaggaggcaaaggtattagtttgtgagctc 670  Q
    |||||||||| ||||||||||| ||||||    ||||||||||||||||| ||| |||| |   || |||||||||| ||||||||| || |  ||  ||    
T  24340454 actgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccataaaaaattaaatttgaaacattaggagggaaaggtatttgtctaagaaatc 24340355  T
Q  671 cggtggatgggttccat 687  Q
    |||||||||| ||||||    
T  24340354 cggtggatggattccat 24340338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 687
Target Start/End: Complemental strand, 24352819 - 24352703
Alignment:
Q  571 actgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaatttaagtaataatcattaggaggcaaaggtattagtttgtgagctc 670  Q
    |||||||||| ||||||||||| ||||||    ||||||||||||||||| ||| |||| |   || |||||||||| ||||||||| || |  ||  ||    
T  24352819 actgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccataaaaaattaaatttgaaacattaggagggaaaggtatttgtctaagaaatc 24352720  T
Q  671 cggtggatgggttccat 687  Q
    |||||||||| ||||||    
T  24352719 cggtggatggattccat 24352703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 518
Target Start/End: Complemental strand, 24322900 - 24322835
Alignment:
Q  454 ttactacaaaaa-ggccaatgggtagtacccacaatttccttccacacattagctttcaatgagaa 518  Q
    |||||||||||| ||| |||| |||| |||||||||||| |||||| |||||||| |||| |||||    
T  24322900 ttactacaaaaaaggcaaatgtgtaggacccacaatttcgttccacgcattagctctcaaagagaa 24322835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 24369946 - 24369906
Alignment:
Q  24 tgcatcttcacaataggagttatgctctagaaactctcctt 64  Q
    ||||||||| |||||||||| |||||| |||||||||||||    
T  24369946 tgcatcttcccaataggagtgatgctcaagaaactctcctt 24369906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 21979447 - 21979520
Alignment:
Q  336 cctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccc 409  Q
    |||||||||||||| |||||||||||||||| | ||| ||| |||||  ||||||| |||||||||||||||||    
T  21979447 cctttctattaaatcaaaggcaacaataacaaacacagataaatcataccgaaaagtcaaccaatgaatagccc 21979520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 21016030 - 21015963
Alignment:
Q  378 atcatgacgaaaagccaaccaatgaatagccccgttgaagaacgagtctaccatgggataataagagg 445  Q
    ||||||||||||||||||||||||||||||||| || || | |||  ||||||||| ||||| |||||    
T  21016030 atcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctaccatggaataatcagagg 21015963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 47451717 - 47451798
Alignment:
Q  337 ctttctattaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaaga 418  Q
    ||||| ||||||| ||| ||| |||||||||  |   ||||||||||||||||||||||||||| ||||||||| |||||||    
T  47451717 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaaga 47451798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 687
Target Start/End: Original strand, 47452022 - 47452067
Alignment:
Q  642 aggaggcaaaggtattagtttgtgagctccggtggatgggttccat 687  Q
    |||||||||||||||| |||||||| |||| |||||||| ||||||    
T  47452022 aggaggcaaaggtatttgtttgtgaactccagtggatggattccat 47452067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 560 - 620
Target Start/End: Original strand, 11005977 - 11006037
Alignment:
Q  560 tatcatacgatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    ||||||| || ||||| |||| ||||||||||||| ||||  | |||||||||||||||||    
T  11005977 tatcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 560 - 620
Target Start/End: Original strand, 11024552 - 11024612
Alignment:
Q  560 tatcatacgatactgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccata 620  Q
    ||||||| || ||||| |||| ||||||||||||| ||||  | |||||||||||||||||    
T  11024552 tatcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 30119911 - 30119963
Alignment:
Q  169 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatat 221  Q
    |||||| | ||||||||||||||||||||| ||||||||| ||| ||||||||    
T  30119911 acaagagtcttaatccaagatgaatgcactgcatattcttgcattacccatat 30119963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 4031727 - 4031789
Alignment:
Q  344 ttaaatgaaaggcaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatag 406  Q
    |||||| ||||||||| |||||||  |   ||| |||||||||||||||||||||||||||||    
T  4031727 ttaaatcaaaggcaacgataacatttatcgataaatcatgacgaaaagccaaccaatgaatag 4031789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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