View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9231_low_32 (Length: 247)

Name: NF9231_low_32
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9231_low_32
NF9231_low_32
[»] chr3 (16 HSPs)
chr3 (12-222)||(26537481-26537694)
chr3 (118-218)||(27661303-27661404)
chr3 (111-217)||(27662394-27662500)
chr3 (114-217)||(3149434-3149539)
chr3 (118-216)||(27329029-27329127)
chr3 (133-218)||(1677172-1677257)
chr3 (104-217)||(39870615-39870728)
chr3 (104-206)||(3149811-3149915)
chr3 (134-217)||(13645043-13645126)
chr3 (13-63)||(33551651-33551704)
chr3 (147-217)||(27361399-27361469)
chr3 (138-207)||(34594455-34594524)
chr3 (136-206)||(3026666-3026737)
chr3 (136-206)||(39871930-39872001)
chr3 (34-72)||(34594321-34594359)
chr3 (13-72)||(34595706-34595768)
[»] chr5 (1 HSPs)
chr5 (88-217)||(33489683-33489812)
[»] chr7 (13 HSPs)
chr7 (122-218)||(19639752-19639848)
chr7 (104-217)||(38758100-38758214)
chr7 (101-219)||(5974311-5974429)
chr7 (104-206)||(38756826-38756930)
chr7 (13-72)||(20208393-20208455)
chr7 (133-207)||(44815890-44815964)
chr7 (133-218)||(5975439-5975524)
chr7 (83-160)||(19638679-19638756)
chr7 (139-217)||(41592978-41593056)
chr7 (104-216)||(30045948-30046061)
chr7 (174-217)||(20207933-20207976)
chr7 (34-72)||(20207769-20207807)
chr7 (32-72)||(5974255-5974295)
[»] chr4 (6 HSPs)
chr4 (104-216)||(11148512-11148625)
chr4 (104-222)||(34538292-34538413)
chr4 (104-217)||(34539581-34539695)
chr4 (138-218)||(2671736-2671816)
chr4 (133-218)||(20946050-20946135)
chr4 (32-72)||(4284319-4284359)
[»] chr8 (4 HSPs)
chr8 (118-222)||(44690225-44690328)
chr8 (18-72)||(44690093-44690150)
chr8 (118-206)||(27411005-27411093)
chr8 (133-218)||(7274436-7274521)
[»] chr1 (11 HSPs)
chr1 (138-222)||(9419570-9419654)
chr1 (114-217)||(13223089-13223193)
chr1 (118-222)||(27524474-27524578)
chr1 (122-222)||(12097709-12097809)
chr1 (104-206)||(40767787-40767891)
chr1 (110-222)||(13229046-13229161)
chr1 (118-222)||(28253383-28253488)
chr1 (132-207)||(37401220-37401296)
chr1 (134-222)||(12096070-12096158)
chr1 (147-222)||(37402399-37402474)
chr1 (125-217)||(35381567-35381659)
[»] chr6 (1 HSPs)
chr6 (111-218)||(1134317-1134423)
[»] chr2 (11 HSPs)
chr2 (110-222)||(44904700-44904817)
chr2 (104-222)||(28165822-28165943)
chr2 (114-217)||(28167107-28167213)
chr2 (143-217)||(31559312-31559386)
chr2 (32-72)||(31559486-31559526)
chr2 (146-218)||(30547820-30547892)
chr2 (142-217)||(44905952-44906028)
chr2 (139-217)||(43517852-43517930)
chr2 (13-69)||(9262825-9262884)
chr2 (138-218)||(5696154-5696234)
chr2 (17-68)||(31558021-31558075)
[»] scaffold0517 (2 HSPs)
scaffold0517 (132-207)||(6780-6856)
scaffold0517 (147-222)||(5602-5677)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 26537481 - 26537694
Alignment:
Q  12 attgcgaaacagcccttgtatctt---aactttttggaattggtccctaacgtcaacttccgttnnnnnnnnnntttggtggccaacggaggcacacgtg 108  Q
    ||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||| ||          |||| |||||||||||||||||| ||    
T  26537481 attgcgaaacaacccttgtatcttcttaactttttggaattggtccctaacgtcaacttccattaaaaaaaagttttgatggccaacggaggcacacatg 26537580  T
Q  109 tcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgc 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  26537581 tcacttgatgagatgacaattggtgttagtagagggactaaaatcaaaaacacatatttaaataaggatgaaattaaaaaacgtaatcatcaaattttac 26537680  T
Q  209 aatttaaaacccaa 222  Q
    ||||||||||||||    
T  26537681 aatttaaaacccaa 26537694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 27661303 - 27661404
Alignment:
Q  118 gagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaa-aaacgtaatcatcaaattttgcaatttaaa 216  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||| ||| || |||||||||| ||| |||||||| |||||||| ||||||||    
T  27661303 gagatgacaactggtgttagtagagggactaaaacaaataacacatatttacataggggtgaaattaaagaaatgtaatcataaaattttgaaatttaaa 27661402  T
Q  217 ac 218  Q
    ||    
T  27661403 ac 27661404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 27662500 - 27662394
Alignment:
Q  111 acttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt-aaaaaacgtaatcatcaaattttgca 209  Q
    ||||||||||||| ||| |||| ||||||||||||||||||| |||||| | |||||| |  |||| |||||| ||||||| |||| ||||||||||| |    
T  27662500 acttgatgagatggcaattggtcttagtagagggactaaaactaaaaacgcatatttaca-gaggacgaaattaaaaaaacataattatcaaattttgaa 27662402  T
Q  210 atttaaaa 217  Q
    ||||||||    
T  27662401 atttaaaa 27662394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 3149434 - 3149539
Alignment:
Q  114 tgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt--aaaaaacgtaatcatcaaattttgcaat 211  Q
    ||||||| || || ||||| ||||||||||||||||||||||| || | | |||| ||| ||| ||||||  ||||||| |||||||||||||||| |||    
T  3149434 tgatgagttggcagctggtcttagtagagggactaaaaccaaagacgcatttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaat 3149533  T
Q  212 ttaaaa 217  Q
    ||||||    
T  3149534 ttaaaa 3149539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 27329029 - 27329127
Alignment:
Q  118 gagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaa 216  Q
    ||||||| || | |||||| || | |||||||||||||||||||  ||||| ||| ||||||||||||||||| ||| |||||||||||| | ||||||    
T  27329029 gagatgataagtagtgttaatacaaggactaaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaacatcaaattttgaattttaaa 27329127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 1677172 - 1677257
Alignment:
Q  133 gttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    |||| |||||||||||||||||||||| |  ||||| ||| ||| |||| |||||||||||||||||||| |||| | ||||||||    
T  1677172 gttattagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacgtaatcatcaaaatttgaattttaaaac 1677257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 39870615 - 39870728
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaat 203  Q
    ||||| |||||| ||| ||| |||||||| | | |||||||||||||| |||||||   | |||| ||| ||||| |||||||||||||||||||||| |    
T  39870615 acgtggcacttgctgatatggcaactggtttaattagagggactaaaatcaaaaacgtatttttacatagggatgtaattaaaaaacgtaatcatcaatt 39870714  T
Q  204 tttgcaatttaaaa 217  Q
    |||| | |||||||    
T  39870715 tttgaattttaaaa 39870728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 3149915 - 3149811
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataagga-tgaaatt-aaaaaacgtaatcatcaa 201  Q
    ||||| ||||||||||||||||| ||| | || |||||||||| ||||| |||||| | | |||| ||| ||| ||||||| ||||||||||||||||||    
T  3149915 acgtggcacttgatgagatgacagctgctcttggtagagggacaaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaa 3149816  T
Q  202 atttt 206  Q
    |||||    
T  3149815 atttt 3149811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 13645043 - 13645126
Alignment:
Q  134 ttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||||||||||||||||||||| |  ||||| ||| ||| |||| |||||||| |||| |||||| |||| ||| |||||    
T  13645043 ttagtagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataataatcaaaatttgaaatgtaaaa 13645126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 33551651 - 33551704
Alignment:
Q  13 ttgcgaaacagcccttgtatctt---aactttttggaattggtccctaacgtca 63  Q
    |||||||||||||||||||||||   ||||||||||||||| ||||||||||||    
T  33551651 ttgcgaaacagcccttgtatcttcttaactttttggaattgatccctaacgtca 33551704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 27361399 - 27361469
Alignment:
Q  147 taaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||||||||||  ||||| ||| ||||||||||||||||| |||  ||||||||||| | |||||||    
T  27361399 taaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaatatcaaattttgaattttaaaa 27361469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 34594455 - 34594524
Alignment:
Q  138 tagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttg 207  Q
    ||||||||||||||||||||||    ||||| ||| ||||||||||||||||| |||||||  |||||||    
T  34594455 tagagggactaaaaccaaaaacggaaatttacatagggatgaaattaaaaaacataatcattgaattttg 34594524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 3026737 - 3026666
Alignment:
Q  136 agtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt-aaaaaacgtaatcatcaaatttt 206  Q
    |||||||||||||||||||||||||  | |||| ||| ||||| |||| ||||||||||| |||||| ||||    
T  3026737 agtagagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaaacgtaaacatcaattttt 3026666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 39872001 - 39871930
Alignment:
Q  136 agtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt-aaaaaacgtaatcatcaaatttt 206  Q
    |||||||||||||||||||||||||  | |||| ||| ||||| |||| ||||||||||| |||||| ||||    
T  39872001 agtagagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaaacgtaaacatcaattttt 39871930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 34594321 - 34594359
Alignment:
Q  34 ttaactttttggaattggtccctaacgtcaacttccgtt 72  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  34594321 ttaactttttggaattggtccctaacgtaatcttccgtt 34594359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 34595768 - 34595706
Alignment:
Q  13 ttgcgaaacagcccttgtatctt---aactttttggaattggtccctaacgtcaacttccgtt 72  Q
    |||||||||| ||||||||||||   ||| ||||| |||||||||||||| ||||||| ||||    
T  34595768 ttgcgaaacaacccttgtatcttgttaaccttttgaaattggtccctaacatcaactttcgtt 34595706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 33489812 - 33489683
Alignment:
Q  88 tggccaacggaggcacacgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaa 187  Q
    |||| |||||| ||| | ||| ||||||||||| || |||||||| |||||||||||||||| ||||||||| | | |||| ||| ||| | ||||||||    
T  33489812 tggctaacggacgcatatgtggcacttgatgagttggcaactggtcttagtagagggactaataccaaaaacgcatttttacatagggacggaattaaaa 33489713  T
Q  188 aacgtaatcatcaaattttgcaatttaaaa 217  Q
    ||| |||||||||||||||| |||||||||    
T  33489712 aacataatcatcaaattttgaaatttaaaa 33489683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 19639848 - 19639752
Alignment:
Q  122 tgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    ||||||| | |||||||||||||| |||||| |||||| | | |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  19639848 tgacaaccgttgttagtagagggattaaaacaaaaaacgcatgtttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaac 19639752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 38758214 - 38758100
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaa-aaaacgtaatcatcaaa 202  Q
    ||||| ||| ||||||  || |||||||| |||||||||||||||||||||||||||| | |||| ||| ||| |||||||| ||||| |||||||||||    
T  38758214 acgtggcacatgatgaattggcaactggtcttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaa 38758115  T
Q  203 ttttgcaatttaaaa 217  Q
    ||||| |||||||||    
T  38758114 ttttggaatttaaaa 38758100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 5974311 - 5974429
Alignment:
Q  101 cacacgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatca 200  Q
    ||||| |||||||||||||||||  |  |||||||||||||| ||||||||  ||||||||  ||||| | | |||| |||||||||||| |||||||||    
T  5974311 cacacatgtcacttgatgagatggtatatggtgttagtagagcgactaaaataaaaaacacaaatttacacagggataaaattaaaaaacataatcatca 5974410  T
Q  201 aattttgcaatttaaaacc 219  Q
    || |||| |||||||||||    
T  5974411 aagtttgaaatttaaaacc 5974429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 38756826 - 38756930
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataagga-tgaaatt-aaaaaacgtaatcatcaa 201  Q
    ||||| |||||||||||||  |||||| | ||||||||||||||||||| |||||||| | |||| ||| ||| | ||||| ||||||||||||||||||    
T  38756826 acgtggcacttgatgagattgcaactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaa 38756925  T
Q  202 atttt 206  Q
    |||||    
T  38756926 atttt 38756930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 20208455 - 20208393
Alignment:
Q  13 ttgcgaaacagcccttgtatc---ttaactttttggaattggtccctaacgtcaacttccgtt 72  Q
    |||||||||| ||||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  20208455 ttgcgaaacaacccttgtatcatgttaaatttttggaattggtccctaacgtcaacttccgtt 20208393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 44815964 - 44815890
Alignment:
Q  133 gttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttg 207  Q
    |||||||||||| |||||||||||||| | | |||| |||||||| ||||||||||| ||||| ||||| |||||    
T  44815964 gttagtagaggggctaaaaccaaaaacgcatttttacataaggattaaattaaaaaaagtaataatcaatttttg 44815890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 5975524 - 5975439
Alignment:
Q  133 gttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    |||||||||||||||||||| |||||  |  ||||| ||| ||| ||||||||||||| ||||||||||| |||  ||||||||||    
T  5975524 gttagtagagggactaaaacaaaaaatgcaaatttacatagggacgaaattaaaaaacataatcatcaaaatttaaaatttaaaac 5975439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 19638679 - 19638756
Alignment:
Q  83 tttggtggccaacggaggcacacgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaaca 160  Q
    ||||||||| ||| || ||| ||||| |||||||| |||||  ||||||| ||||||||||||||||||| |||||||    
T  19638679 tttggtggctaacagacgcatacgtgacacttgataagatggtaactggtcttagtagagggactaaaacaaaaaaca 19638756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 41593056 - 41592978
Alignment:
Q  139 agagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||||||||||||||||    ||| | ||| |||||||||||||||| |||| |||||||||||| | |||||||    
T  41593056 agagggactaaaaccaaaaacgaaaattgacatagggatgaaattaaaaaaagtaaacatcaaattttgaattttaaaa 41592978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 30045948 - 30046061
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt-aaaaaacgtaatcatcaaa 202  Q
    ||||| ||| ||||||| || |||||  | ||||||||||||||||||||||||||   | |||| ||| ||| |||||| ||||||  |||| ||||||    
T  30045948 acgtggcacatgatgagttgccaactaatcttagtagagggactaaaaccaaaaacgtatttttacatagggacgaaattaaaaaaatataataatcaaa 30046047  T
Q  203 ttttgcaatttaaa 216  Q
    ||||| ||||||||    
T  30046048 ttttggaatttaaa 30046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 20207933 - 20207976
Alignment:
Q  174 ggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||    
T  20207933 ggatgaaattaaaaaatgtaatcatctaattttgaaatttaaaa 20207976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 20207769 - 20207807
Alignment:
Q  34 ttaactttttggaattggtccctaacgtcaacttccgtt 72  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  20207769 ttaactttttaaaattggtccctaacgtcaacttccgtt 20207807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 5974255 - 5974295
Alignment:
Q  32 tcttaactttttggaattggtccctaacgtcaacttccgtt 72  Q
    ||||||||||||| ||||||||| |||| ||||||||||||    
T  5974255 tcttaactttttgaaattggtccataacatcaacttccgtt 5974295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 11148512 - 11148625
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt-aaaaaacgtaatcatcaaa 202  Q
    ||||| ||| ||||||| || |||||| | |||||||||||||||||||||||||||| | |||| ||| ||| |||||| ||||||| |||||||||||    
T  11148512 acgtggcacatgatgagttggcaactgatcttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaa 11148611  T
Q  203 ttttgcaatttaaa 216  Q
    ||||| ||||||||    
T  11148612 ttttggaatttaaa 11148625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 34538292 - 34538413
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataagga-tgaaatt-aaaaaacgtaatcatcaa 201  Q
    ||||| |||||||||||||| |||||| | ||||||||||||||||||| |||||| | | |||| ||| ||| ||||||| ||||||||||||||||||    
T  34538292 acgtggcacttgatgagatggcaactgctcttagtagagggactaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaa 34538391  T
Q  202 a-ttttgcaatttaaaacccaa 222  Q
    | ||||| ||||| ||||||||    
T  34538392 atttttgaaattttaaacccaa 34538413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 34539695 - 34539581
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt--aaaaaacgtaatcatcaa 201  Q
    ||||| ||| ||||||| || |||||||| |||||||||||||||||| ||||||  | | |||| ||| ||| ||||||  ||||||| ||||||||||    
T  34539695 acgtgacacatgatgagttggcaactggtcttagtagagggactaaaa-caaaaaagcatttttacatagggacgaaattaaaaaaaacataatcatcaa 34539597  T
Q  202 attttgcaatttaaaa 217  Q
    |||||| |||||||||    
T  34539596 attttggaatttaaaa 34539581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 2671736 - 2671816
Alignment:
Q  138 tagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    |||||||||||||||||||||| |  ||||| ||| ||| |||| |||||||| ||||||||||| |||| | ||||||||    
T  2671736 tagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaac 2671816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 20946050 - 20946135
Alignment:
Q  133 gttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    |||| ||||||||||||||||||||||||  ||||| | | ||| |||| |||||||  ||||||||||| |||| | ||||||||    
T  20946050 gttattagagggactaaaaccaaaaacacaaatttacacagggacgaaaataaaaaatataatcatcaaaatttgaattttaaaac 20946135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 4284359 - 4284319
Alignment:
Q  32 tcttaactttttggaattggtccctaacgtcaacttccgtt 72  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  4284359 tcttaactttttggaattggtccctaacatcaggttccgtt 4284319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 44690225 - 44690328
Alignment:
Q  118 gagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    ||||||| || || ||||| | |||||||||||||||||||||  |||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||    
T  44690225 gagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 44690323  T
Q  218 cccaa 222  Q
     ||||    
T  44690324 accaa 44690328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 44690093 - 44690150
Alignment:
Q  18 aaacagcccttgtatctt---aactttttggaattggtccctaacgtcaacttccgtt 72  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||    
T  44690093 aaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgtt 44690150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 27411093 - 27411005
Alignment:
Q  118 gagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaatttt 206  Q
    ||||||| || | |||||| || | |||||||||| ||||||||  ||||| ||| ||||||||||||||||| ||| |||||||||||    
T  27411093 gagatgataagtagtgttaatacaaggactaaaactaaaaacacaaatttacatagggatgaaattaaaaaacctaaacatcaaatttt 27411005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 7274521 - 7274436
Alignment:
Q  133 gttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    |||| ||||| |||||||||||||||  |  ||||| ||| |||||||| |||||||| ||||||||||| |||| | ||||||||    
T  7274521 gttattagagagactaaaaccaaaaatgcaaatttacatagggatgaaaataaaaaacataatcatcaaaatttgaattttaaaac 7274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 9419654 - 9419570
Alignment:
Q  138 tagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaacccaa 222  Q
    |||||||| |||||||||||||   |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9419654 tagagggaataaaaccaaaaacgaatatttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaaaccaa 9419570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 13223089 - 13223193
Alignment:
Q  114 tgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt-aaaaaacgtaatcatcaaattttgcaatt 212  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||| | | |||| ||| ||| |||||| ||||||| |||||||||||||||| ||||    
T  13223089 tgatgagttggcaactagtgttagtagagggactaaaaccaaaaacgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatt 13223188  T
Q  213 taaaa 217  Q
    |||||    
T  13223189 taaaa 13223193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 27524474 - 27524578
Alignment:
Q  118 gagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    ||||||| || | ||||||||| |||||||||||||||||||||  ||||| ||| |||||||||| |||||||||| |||||||||||| | |||||||    
T  27524474 gagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatttaaaaacgtaaacatcaaattttgaattttaaaa 27524573  T
Q  218 cccaa 222  Q
     ||||    
T  27524574 accaa 27524578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 12097809 - 12097709
Alignment:
Q  122 tgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaaccca 221  Q
    ||||||||||| |||||||||||||||||||||||||| | | ||||  || ||||||||||||||||| |||| ||||| ||||| | ||||||| |||    
T  12097809 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttaggtagggatgaaattaaaaaacttaattatcaatttttgaattttaaaaacca 12097710  T
Q  222 a 222  Q
    |    
T  12097709 a 12097709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 40767787 - 40767891
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataagga-tgaaa-ttaaaaaacgtaatcatcaa 201  Q
    ||||| |||||||||||||| |||||| | ||||||||||||||||||| |||||| | | |||| ||||||| ||||| | ||||||||||||||||||    
T  40767787 acgtggcacttgatgagatggcaactgctcttagtagagggactaaaacgaaaaacgcatttttacataaggactgaaactaaaaaaacgtaatcatcaa 40767886  T
Q  202 atttt 206  Q
    |||||    
T  40767887 atttt 40767891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 13229161 - 13229046
Alignment:
Q  110 cacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataagga-tgaaatt-aaaaaacgtaatcatcaa-atttt 206  Q
    ||||||||||||||||||||| | ||||||||||||||||||| |||||||| | |||| ||| ||| | ||||| ||||||||||||||||||  ||||    
T  13229161 cacttgatgagatgacaactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaatttttt 13229062  T
Q  207 gcaatttaaaacccaa 222  Q
    | ||||| ||||||||    
T  13229061 gaaattttaaacccaa 13229046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 28253488 - 28253383
Alignment:
Q  118 gagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaatt-aaaaaacgtaatcatcaaattttgcaatttaaa 216  Q
    ||||||| || | ||||||||||||||||||||| |||||||    ||||| ||| |||||||||| |||||| |||| |||||||||||| | ||||||    
T  28253488 gagatgataagtagtgttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaaggtaaacatcaaattttgaattttaaa 28253389  T
Q  217 acccaa 222  Q
    | ||||    
T  28253388 aaccaa 28253383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 37401220 - 37401296
Alignment:
Q  132 tgttagtagagggactaaaaccaaaaa-cacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttg 207  Q
    |||||||| |||||||||||||||||| |||  ||||| ||| ||||||| |||||||| |||| ||||||||||||    
T  37401220 tgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttg 37401296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 12096070 - 12096158
Alignment:
Q  134 ttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaacccaa 222  Q
    ||||||||| |||||||||||||||| | | |||| |   ||||||||||||||||| |||| ||||| ||||| | ||||||| ||||    
T  12096070 ttagtagagtgactaaaaccaaaaacgcatttttacacggggatgaaattaaaaaacttaattatcaatttttgaattttaaaaaccaa 12096158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 37402474 - 37402399
Alignment:
Q  147 taaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaacccaa 222  Q
    ||||||||||||  |  ||||| ||| |||||||||||||||||||||  ||||||||||| | ||||||| ||||    
T  37402474 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaa 37402399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 35381567 - 35381659
Alignment:
Q  125 caactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||| | | ||||| |||||||| |||||||   | |||| ||| ||||| |||||||||| ||||||||||| ||||| | |||||||    
T  35381567 caactggtttaattagagagactaaaagcaaaaacgtatttttacatagggatgtaattaaaaaatgtaatcatcaatttttgaattttaaaa 35381659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 1134317 - 1134423
Alignment:
Q  111 acttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaa 210  Q
    |||||||||||||||||||||  |||||||||||||| ||| ||||||| | |||||| ||| |||  |||||| ||||| |||||||||| ||||| ||    
T  1134317 acttgatgagatgacaactggacttagtagagggact-aaatcaaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaa 1134415  T
Q  211 tttaaaac 218  Q
    ||||||||    
T  1134416 tttaaaac 1134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 44904700 - 44904817
Alignment:
Q  110 cacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataagga-tgaaatt---aaaaaacgtaatcatcaaa-tt 204  Q
    ||||||||||||||||||||| | ||||||||||||||||||  |||||||| | |||| ||| ||| |||||||   ||||||||||||||||||| ||    
T  44904700 cacttgatgagatgacaactgctcttagtagagggactaaaatgaaaaacacatttttacatagggactgaaattaaaaaaaaacgtaatcatcaaattt 44904799  T
Q  205 ttgcaatttaaaacccaa 222  Q
    ||| ||||| ||||||||    
T  44904800 ttgaaattttaaacccaa 44904817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 28165822 - 28165943
Alignment:
Q  104 acgtgtcacttgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataagga-tgaaatt-aaaaaacgtaatcatcaa 201  Q
    ||||| ||||||||||||||  ||||| | ||||||||||||||||||| |||| | | | |||| ||||||| ||||||| ||||||||||||||||||    
T  28165822 acgtgacacttgatgagatggaaactgctcttagtagagggactaaaacgaaaagcgcatttttacataaggactgaaattaaaaaaacgtaatcatcaa 28165921  T
Q  202 a-ttttgcaatttaaaacccaa 222  Q
    | ||||| ||||| ||||||||    
T  28165922 atttttgaaattttaaacccaa 28165943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 28167213 - 28167107
Alignment:
Q  114 tgatgagatgacaactggtgttagtagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaa---aaaacgtaatcatcaaattttgcaa 210  Q
    ||||||| || |||||||| |||||||||||||||||| ||||||| | | |||| ||| ||| ||||||||   ||||| |||||||||||||||| ||    
T  28167213 tgatgagttggcaactggtcttagtagagggactaaaatcaaaaacgcatttttacatagggacgaaattaaaaaaaaacataatcatcaaattttggaa 28167114  T
Q  211 tttaaaa 217  Q
    |||||||    
T  28167113 tttaaaa 28167107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 31559386 - 31559312
Alignment:
Q  143 ggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||||||||||||   |||||| ||| |||||||||||||| ||||||||||| ||||||| |||||||||    
T  31559386 ggactaaaaccaaaaacgaatatttacatagggatgaaattaaaacacgtaatcatcgaattttgaaatttaaaa 31559312  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 31559526 - 31559486
Alignment:
Q  32 tcttaactttttggaattggtccctaacgtcaacttccgtt 72  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31559526 tcttaactttttggaattggtccctaacgtcaacttccgtt 31559486  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 30547892 - 30547820
Alignment:
Q  146 ctaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    |||||||||||||    |||||| ||||||| ||||||||||||| |||||||||||||||  ||||||||||    
T  30547892 ctaaaaccaaaaatgtatatttacataaggacgaaattaaaaaacataatcatcaaattttaaaatttaaaac 30547820  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 44906028 - 44905952
Alignment:
Q  142 gggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaa-cgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||||||||||||  | | |||| ||| ||| |||||||||||| | |||||||||||||||| |||||||||    
T  44906028 gggactaaaaccaaaaatgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaa 44905952  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 43517930 - 43517852
Alignment:
Q  139 agagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaa 217  Q
    |||||||||||||||||||||    ||| | ||| ||||||| |||||||| |||| |||||||||||| | |||||||    
T  43517930 agagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttgaattttaaaa 43517852  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 9262884 - 9262825
Alignment:
Q  13 ttgcgaaacagcccttgtatctt---aactttttggaattggtccctaacgtcaacttcc 69  Q
    ||||||||||  |||||||||||   | |||| |||||||||||||||||||||||||||    
T  9262884 ttgcgaaacaatccttgtatcttgttatctttatggaattggtccctaacgtcaacttcc 9262825  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 5696234 - 5696154
Alignment:
Q  138 tagagggactaaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaac 218  Q
    ||||||||||||||||||||||    ||||| | | ||| |||| |||||||| ||||||||||| |||| | ||||||||    
T  5696234 tagagggactaaaaccaaaaacgtaaatttacacagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaac 5696154  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 31558021 - 31558075
Alignment:
Q  17 gaaacagcccttgtatctt---aactttttggaattggtccctaacgtcaacttc 68  Q
    |||||| ||||||||||||   ||||||||| |||||| ||||||||||||||||    
T  31558021 gaaacaacccttgtatcttgttaactttttgaaattggcccctaacgtcaacttc 31558075  T

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Target: scaffold0517 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 6856 - 6780
Alignment:
Q  132 tgttagtagagggactaaaaccaaaaa-cacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttg 207  Q
    |||||||| |||||||||||||||||| |||  ||||| ||| ||||||| |||||||| |||| ||||||||||||    
T  6856 tgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttg 6780  T

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Target: scaffold0517; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 5602 - 5677
Alignment:
Q  147 taaaaccaaaaacacgtatttaaataaggatgaaattaaaaaacgtaatcatcaaattttgcaatttaaaacccaa 222  Q
    ||||||||||||  |  ||||| ||| |||||||||||||||||||||  ||||||||||| | ||||||| ||||    
T  5602 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaa 5677  T

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