View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_38 (Length: 241)
Name: NF9231_low_38
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 26537374 - 26537170
Alignment:
| Q |
13 |
atgttatctcttttaatatctttctttagtttagaactttaaatctatcaaatatttaagttattatacattatttaagagctatgcaatgtcatgatta |
112 |
Q |
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| T |
26537374 |
atgttatctcttttaatatctttctctagtttagaacttcaaatctatgaaagatttaagttattatacattatttaagagctatgcaatgtcatgatta |
26537275 |
T |
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| Q |
113 |
attcatactacaataactgcaatccataacatatcatatgtgacaactgaaatcatgaaatcacatacgcgactgcgaccataactatgaccattattta |
212 |
Q |
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| T |
26537274 |
attcatactacagtaactgcaatccataacgtatcatatgggacaactgaaatcat-----catatacgcggctgcgaccataactatgaccattattta |
26537180 |
T |
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| Q |
213 |
aaacttgacg |
222 |
Q |
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|||||||||| |
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| T |
26537179 |
aaacttgacg |
26537170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 31742998 - 31743050
Alignment:
| Q |
65 |
tatttaagttattatacattatttaagagctatgcaatgtcatgattaattca |
117 |
Q |
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| T |
31742998 |
tatttaagttattatacattatttaagaactgtgcaatgttgtgattaattca |
31743050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 33049235 - 33049287
Alignment:
| Q |
65 |
tatttaagttattatacattatttaagagctatgcaatgtcatgattaattca |
117 |
Q |
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||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
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| T |
33049235 |
tatttaagttattatacattatttaagagttgtgcaatgttttgattaattca |
33049287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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