View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_5 (Length: 686)
Name: NF9231_low_5
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 20 - 672
Target Start/End: Complemental strand, 34869873 - 34869229
Alignment:
| Q |
20 |
ttgcaggaccaaaattgtacccgacaaaaatatcaacagtcttaagattctaatttctattttgtcacaatattacaagatgatcctcttttnnnnnnnn |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34869873 |
ttgcaggaccaaaattgtacccgacaaaaatatcaacactcttaagattctaatttctattttgtcacaatattacaagatgatcctcttttaaaaaaaa |
34869774 |
T |
|
| Q |
120 |
tgtaattctgcaaaagttacattatcatcttaaataaccacagttttatatttaaacaataaccaaaaagatatatctccaccgacacaattaaagtgca |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34869773 |
attaattctgcaaaagttacattatcatcttaaagaaccacagttttatatttaaacaataaccaaaaagatatatctccaccgacacaattaaagtgca |
34869674 |
T |
|
| Q |
220 |
gtattacacaggcttgttttgcaaattatattcatacaaaataacgccacaaattatatagcaaatagtaatgccagatattccctnnnnnnngtactgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34869673 |
gtattacacaggcttgttttgcaaattatattcatacaaaataacgccacaaattatatagcaaatagtaatgccagatattccctaaaaaaagtactgc |
34869574 |
T |
|
| Q |
320 |
cagtgccagatatattatttggctattaagtgctgagcgggatggctccagcatcattgagaaggggaaccaattgacctgtccggtgtttctccaaaac |
419 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34869573 |
cag------atatattatttggctattaagtgctgagcgggatggctccagcatcattgagaaggggaaccaattgacctgtccggtgtttctccaaaac |
34869480 |
T |
|
| Q |
420 |
agctgcagcaaataaacatgtgataaaaatattacacacacaaataatgaaaaacagaacaataacaactctagttttggtttgcctcgtgaaaaagtag |
519 |
Q |
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| T |
34869479 |
agctgcaacaaataaacatgtgataaaaatattacacacaca--taatgaaaaacagaacaataacaactctagttttggtttgcctcgtgaaaaagtag |
34869382 |
T |
|
| Q |
520 |
caaaaggagtgtggccttacaatcacaaccaccaatgtgcttgcctccaataaacacgttaggtactgtcctttgccctgtccactcagctaatgctgct |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34869381 |
caaaaggagtgtggccttacaatcacaaccaccaatgtgcttgcctccaataaacacgttaggtactgtcctttgccctgtccactcagctaatgctgct |
34869282 |
T |
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| Q |
620 |
tgaatctcacccccatcaccttcaaataggtaaaaacagcagaagataatact |
672 |
Q |
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| T |
34869281 |
tgaatctcacccccatcaccttcaaataggtaaaaacagcataagataatact |
34869229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 360 - 653
Target Start/End: Complemental strand, 34865162 - 34864865
Alignment:
| Q |
360 |
gatggctccagcatcattgagaaggggaaccaattgacctgtccggtgtttctccaaaacagctgcagcaaataaacatgtgataaaaatattacacaca |
459 |
Q |
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|||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
34865162 |
gatggctccagcatcagtgagaagaggaatcaattgacctgcacggtgtttctccaaaatagctgcaacaaataaacatgtgataaaaatattacacaca |
34865063 |
T |
|
| Q |
460 |
caaataatgaaaa---acagaacaataacaactctagttttgg-tttgcctcgtgaaaaagtagcaaaaggagtgtg--gccttacaatcacaaccacca |
553 |
Q |
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||||||||||| | |||| || ||||| |||||||||| |||||| |||||||||| ||||| | ||||||| |||||||| |||||||||||| |
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| T |
34865062 |
--aataatgaaaacagaaagaaaaaaaacaagtctagttttgtctttgccacgtgaaaaagaagcaacatgagtgtgtagccttacagtcacaaccacca |
34864965 |
T |
|
| Q |
554 |
atgtgcttgcctccaataaacacgttaggtactgtcctttgccctgtccactcagctaatgctgcttgaatctcacccccatcaccttcaaataggtaaa |
653 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
34864964 |
atgtgcttgcctccaataaacacattaggtactgtcctttgccctgtccactcagttaatgctgcatgaatctcatctccatcaccttcaaataggtaaa |
34864865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 629
Target Start/End: Original strand, 13381077 - 13381171
Alignment:
| Q |
535 |
cttacaatcacaaccaccaatgtgcttgcctccaataaacacgttaggtactgtcctttgccctgtccactcagctaatgctgcttgaatctcac |
629 |
Q |
| |
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|||||| ||||| ||||||||||| ||||| |||||||| || || || || ||||| || || ||||||| ||||||||| |||| ||||||| |
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| T |
13381077 |
cttacagtcacagccaccaatgtggttgccgccaataaaaacatttggcacagtcctctgaccagtccactgggctaatgctccttggatctcac |
13381171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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