View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_6 (Length: 601)
Name: NF9231_low_6
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 175 - 362
Target Start/End: Original strand, 35443205 - 35443393
Alignment:
| Q |
175 |
acaaacataaaa-aaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag |
273 |
Q |
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| T |
35443205 |
acaaacataaaaaaaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag |
35443304 |
T |
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| Q |
274 |
agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatattagag |
362 |
Q |
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| T |
35443305 |
agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatattagag |
35443393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 35442988 - 35443146
Alignment:
| Q |
19 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
118 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
35443087 |
T |
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| Q |
119 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
177 |
Q |
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| T |
35443088 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
35443146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 521 - 601
Target Start/End: Original strand, 35443538 - 35443618
Alignment:
| Q |
521 |
ataaaattatatattcaaggtacaaaatcaaattatttgactttttgaataaataacatttttatttagatattataattc |
601 |
Q |
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| T |
35443538 |
ataaaattatatattcaatgtacaaaatcaaattatttaactttttgaataaataacatttttatttagatattctaattc |
35443618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
24 |
accacttattttacataaatatatgtattt |
53 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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