View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9231_low_7 (Length: 595)
Name: NF9231_low_7
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_7 |
 | |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 33950536 - 33951097
Alignment:
| Q |
1 |
caggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33950536 |
caggcaaaaacagaagaaggaatctcaaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttaatgatgtcttgaacaaaat |
33950635 |
T |
|
| Q |
101 |
atctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950636 |
atctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaa |
33950735 |
T |
|
| Q |
201 |
tacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
33950736 |
tacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgatt |
33950835 |
T |
|
| Q |
301 |
cctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
33950836 |
cctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatg- |
33950934 |
T |
|
| Q |
401 |
aaattttgtacacaaattcaatgaagatggacaactttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcattt |
500 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
33950935 |
--------------aattcaatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccattt |
33951020 |
T |
|
| Q |
501 |
agcaagttgaaaatggagcttctgaggggtggtagctccacacttgtgttaactggtttaggaggattggggaaaac |
577 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33951021 |
agcaagttgaaaatggagcttctgaggggtggtagctccacacttgtgttgactggtttaggaggattggggaaaac |
33951097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 33990015 - 33990582
Alignment:
| Q |
1 |
caggcaaaaacagaagaaggaatctcaaattcatgagtagcgc---tacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaa |
97 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33990015 |
caggcaaaagcagaggaaggaatctcaaattcatgagtagcgccactacacatattattacccttacaacaagatttca------tgatgtcttgaacaa |
33990108 |
T |
|
| Q |
98 |
aatatctcaaattcttcaaaaagcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaag |
197 |
Q |
| |
|
|||||||||||| || ||| ||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || || ||||| |||||| |
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| T |
33990109 |
aatatctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaag |
33990208 |
T |
|
| Q |
198 |
caatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatg |
297 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33990209 |
caatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatg |
33990308 |
T |
|
| Q |
298 |
attcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatcca |
397 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |
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|
| T |
33990309 |
attcctat------gttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaacta |
33990402 |
T |
|
| Q |
398 |
tgaaaattttgtacacaaattcaatgaagatggacaactttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagca |
497 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
33990403 |
tgaaacttttgaacacaaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatacca |
33990502 |
T |
|
| Q |
498 |
tttagcaagttgaaaatggagcttctgaggggtggtagctccacacttgtgttaactggtttaggaggattggggaaaac |
577 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||| |||||||| || || ||||||||||| |||||||| |
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| T |
33990503 |
tttagcaagttgaaaatggagcttataagggatggtagctccacccttgtgttgacgggcttaggaggattagggaaaac |
33990582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 164 - 404
Target Start/End: Original strand, 33959346 - 33959580
Alignment:
| Q |
164 |
aaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcaccccagagaagaaataaatagtctgatagaagaaaatgatgca |
263 |
Q |
| |
|
||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgca |
33959445 |
T |
|
| Q |
264 |
ggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgcttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| || |||| |
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| T |
33959446 |
ggagaaagtgcatgcaaatgttcttctgagaatgattc------ctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacacttt |
33959539 |
T |
|
| Q |
364 |
ataaggccagagaaattcttgagcttctcatccatgaaaat |
404 |
Q |
| |
|
||||| | |||||||||||||||||||||| ||| |||||| |
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|
| T |
33959540 |
ataagccaagagaaattcttgagcttctcaaccacgaaaat |
33959580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 25 - 404
Target Start/End: Original strand, 33973227 - 33973582
Alignment:
| Q |
25 |
tcaaattcatgagtagcgctac---acacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagc |
121 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||| || ||| ||| |
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|
| T |
33973227 |
tcaaattcatgagtagcgccacgacacatattattacccttacaacaagatttaa------tgatgtcttgaacaaaatatctgaaatagttgaaacagc |
33973320 |
T |
|
| Q |
122 |
acaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggatcac |
221 |
Q |
| |
|
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
33973321 |
acgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaa |
33973420 |
T |
|
| Q |
222 |
cccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatggctatgttgttgagg |
321 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||| |||||||| | |
|
|
| T |
33973421 |
cccagagaagaaataaatagtttgataga---------------agaaagtgcatgcaaatcttcttttgagaatgattc------ctacgttgttgatg |
33973499 |
T |
|
| Q |
322 |
agaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaat |
404 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
33973500 |
agaaccaatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaaccacgaaaat |
33973582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 462 - 577
Target Start/End: Original strand, 33973577 - 33973692
Alignment:
| Q |
462 |
gaaaatccaaaattcactgttgggttggatatagcatttagcaagttgaaaatggagcttctgaggggtggtagctccacacttgtgttaactggtttag |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttctgaggggtggtagctccacacttgtgttgactggtttag |
33973676 |
T |
|
| Q |
562 |
gaggattggggaaaac |
577 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33973677 |
gaggattggggaaaac |
33973692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 33959247 - 33959349
Alignment:
| Q |
26 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaattcttcaaaaagcacaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
33959247 |
caaattcatgagtagcgctacacacattattacccttacaacaagatttcaatttcatgatgtcttgaacaaaatatctcaaatacttcaaaaagcacga |
33959346 |
T |
|
| Q |
126 |
aag |
128 |
Q |
| |
|
||| |
|
|
| T |
33959347 |
aag |
33959349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 308 - 577
Target Start/End: Original strand, 10341 - 10613
Alignment:
| Q |
308 |
ctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttataaggccagagaaattcttgagcttctcatccatgaaaatttt |
407 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||| ||||| | | | ||||||||| |
|
|
| T |
10341 |
ctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaaaatttt |
10440 |
T |
|
| Q |
408 |
gtacacaaattcaatgaagatggacaac---tttttaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatatagcatttagca |
504 |
Q |
| |
|
| ||| ||||| |||||| |||||| || | || ||| ||||||| | |||||| ||||||||| |||||| ||||||| | |||||| ||||||||| |
|
|
| T |
10441 |
gaacagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccatttagca |
10540 |
T |
|
| Q |
505 |
agttgaaaatggagcttctgaggggtggtagctccacacttgtgttaactggtttaggaggattggggaaaac |
577 |
Q |
| |
|
|||||||||||||||| |||| | ||| ||||| || |||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
10541 |
agttgaaaatggagctattgagagatggaagctcaacccttgtgttgactggtttgggagggttgggaaaaac |
10613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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