View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9231_low_9 (Length: 504)
Name: NF9231_low_9
Description: NF9231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9231_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Complemental strand, 1978897 - 1978432
Alignment:
| Q |
16 |
ataagtaccgaacaaaacatacatctttcatcaaaattgccaatataatttcttcggtgtaagagttatnnnnnnntatgtcttctctaaggtccactat |
115 |
Q |
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| T |
1978897 |
ataagtaccgaacaaaacatacatctt--------attgccaatataatttcttcggtgtaagagttataaaaaa-tatgtcttctctaaggtccactat |
1978807 |
T |
|
| Q |
116 |
gtcatac---tctaaatcaacctttgatgaacttcaatgggtgattcatattcgaaaaacccttgaagaagaatttgaagaggaagatggtaaattatct |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1978806 |
gtcatataattctaaatcaacctttgatgaacttcaatgggtgattcatattcgaaaaatccttgaagaagaatttgaagaggaagatggtaaattatct |
1978707 |
T |
|
| Q |
213 |
gtaaccattttcaatgtgccaaagcttcttatggctagtgacccagattcttatgttccacaacaagttgcaattggtccttaccattattggagaccag |
312 |
Q |
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| T |
1978706 |
gtaaccattttcaatgtgccaaagcttcttatggctagtgatccagattcttatgttccacaacaagttgcaattggtccttaccattattggagatcag |
1978607 |
T |
|
| Q |
313 |
aactctatgaaatgcaaagttacaagcttgcagccacaaaaagattcttgaaatcactacaaagtttcaagttagataaccttgttgaccaattgacaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1978606 |
aactctatgaaatgcaaagttacaagcttgcagcaacaaaaagattcttgaaatcactacaaagtttcaaattagataaccttgttgaccaattgacaaa |
1978507 |
T |
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| Q |
413 |
gtatgaacaaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgat |
487 |
Q |
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| T |
1978506 |
gtatgaacaaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgat |
1978432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 1947498 - 1947974
Alignment:
| Q |
16 |
ataagtaccgaacaaaacatacatctttcatcaaaattgccaatataatttcttcggtgtaagagttatnnnnnnnta--tgtcttctctaaggtccact |
113 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||| |
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| T |
1947498 |
ataagtaacgaacaaaccatacatctttcatcaaaattgccaatataaattcttcagtgtaagagttataaaaaaaaaaatgtcttctctaaggtccact |
1947597 |
T |
|
| Q |
114 |
atgtcatac---tctaaatcaacctttgatgaacttcaatgggtgattcatattcgaaaaacccttgaagaagaatttgaagaggaagatggtaaattat |
210 |
Q |
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| T |
1947598 |
atgtcatataattctaaatcaacctttgatgaacttcgatgggtgattcatgttagaaaaacccttgaagaagaatttgaagaggaggatggtgaattat |
1947697 |
T |
|
| Q |
211 |
ctgtaaccattttcaatgtgccaaagcttcttatggctagtgacccagattcttatgttccacaacaagttgcaattggtccttaccattattggagacc |
310 |
Q |
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| T |
1947698 |
ctgtaaccattttcaatgtgccaaagcttcttatggctagtgatccagattcttatgttccacaacaagttgcaattggtccttaccattattggagacc |
1947797 |
T |
|
| Q |
311 |
agaactctatgaaatgcaaagttacaagcttgcagccacaaaaagattcttgaaatcactacaaagtttcaagttagataaccttgttgaccaattgaca |
410 |
Q |
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| T |
1947798 |
agaactctatgaaatgcaaagttacaagcttgcagccacaaaaagattcttgaaatcactacaaagtttcaagttagataaccttgttgaccaattgaca |
1947897 |
T |
|
| Q |
411 |
aagtatgaacaaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgat |
487 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1947898 |
aagtatgaacaaagggttagaggatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgat |
1947974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 93 - 490
Target Start/End: Complemental strand, 1985744 - 1985344
Alignment:
| Q |
93 |
atgtcttctctaaggtccactatgtcatac---tctaaatcaacctttgatgaacttcaatgggtgattcatattcgaaaaacccttgaagaagaatttg |
189 |
Q |
| |
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|||||||||||||| || || |||||||| || ||| ||||||||||||| || ||||||||||| |||| |||||||| |||||||| |||| |
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| T |
1985744 |
atgtcttctctaagatctaccatgtcatataattccaaaacaacctttgatgagaatctttgggtgattcaagttcggaaaaccctagaagaagagtttg |
1985645 |
T |
|
| Q |
190 |
aagaggaagatggtaaattatctgtaaccattttcaatgtgccaaagcttcttatggctagtgacccagattcttatgttccacaacaagttgcaattgg |
289 |
Q |
| |
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| T |
1985644 |
aggaggaaaatggtgaattgtctatatccattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattgg |
1985545 |
T |
|
| Q |
290 |
tccttaccattattggagaccagaactctatgaaatgcaaagttacaagcttgcagccacaaaaagattcttgaaatcactacaaagtttcaagttagat |
389 |
Q |
| |
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||| |||||||||||| | | |||||| | ||||||||||| | ||||||||||| | |||||||||||| ||| |||||||||| ||||| ||||| |
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| T |
1985544 |
tccctaccattattggcgtcaagaactttttgaaatgcaaaatcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagat |
1985445 |
T |
|
| Q |
390 |
aaccttgttgaccaattgacaaagtatgaacaaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgattg |
489 |
Q |
| |
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|| |||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||||| || ||||| ||| ||||||||||||| |
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| T |
1985444 |
aatcttgttgaccaattgacaaagttggaacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattg |
1985345 |
T |
|
| Q |
490 |
t |
490 |
Q |
| |
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| |
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|
| T |
1985344 |
t |
1985344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 5624756 - 5624860
Alignment:
| Q |
222 |
ttcaatgtgccaaagcttcttatggctagtgacccagattcttatgttccacaacaagttgcaattggtccttaccattattggagaccagaactctatg |
321 |
Q |
| |
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|||||||| ||||||| ||| |||||||||| |||||||||||| ||| |||||| |||||||||| |||||||||| |||| | | ||| || |||| |
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| T |
5624756 |
ttcaatgtaccaaagccacttttggctagtgatccagattcttatactcctcaacaaattgcaattggaccttaccatttttggcgtcaagagctttatg |
5624855 |
T |
|
| Q |
322 |
aaatg |
326 |
Q |
| |
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||||| |
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|
| T |
5624856 |
aaatg |
5624860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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