View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9233_low_2 (Length: 557)
Name: NF9233_low_2
Description: NF9233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9233_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 14 - 539
Target Start/End: Complemental strand, 25167707 - 25167182
Alignment:
| Q |
14 |
agataaatcgtcaggacctctaggaaagggaggtccttcagccgcgaagggatgtggggtggcctcatcgtaatcgtcatcctcatcagctagcgcatca |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25167707 |
agataaatcgttaggacctctaggaaagggaggtccttcagtcgcgaagggatgtggggtggcctcatcgtaatcgtcatcctcatcagccagcgcatca |
25167608 |
T |
|
| Q |
114 |
gcctccacatggccaatgtcgtgaccctcaactgcttcctcatactgttgcgcgtcataaccacagttcgtgatatcgtgtagctgatcctaataattca |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
25167607 |
gcctccacatggccaatgttgtgaccctcaaccgcttcctcatactattgcgcgtcataaccacagttcgtgatatcatgtagctgatcctgataattca |
25167508 |
T |
|
| Q |
214 |
aatactaggtcgggtcatccacctatgactttgtcggctcgaaacttccttcaccatcaatgggcctccgaccttttctcctcttaggcacatgaaggtt |
313 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
25167507 |
aatactaggtcgggccatccacctgtgactttgtcggctcggaacttccttcaccatcaatgggcctctaacctgttctcctctttggcacatgaaggtt |
25167408 |
T |
|
| Q |
314 |
tgccgcgtccctttcccatcggaggcttctagtcatggtctctttacccaaaccgacccttctatttgggttcttagacatatctacacaaaatcaaaag |
413 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25167407 |
tgccgcatccctttcccatcgaaggcttctagtcatggtctctttacccaaaccgacccttctatttgggttcttagacatatctacacaaaatcaaaag |
25167308 |
T |
|
| Q |
414 |
caaaaatcaatgtaatgctcatttaggccttttaggcaagaacattcacaacataatctaaacaacattcacaactactacgttcatatataacatcgta |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25167307 |
caaaaatcaatgtaatgctcatttaggccttttaggcaagaacattcacaacataatctaaacaacattcacaactactacgttcacatataacatcgta |
25167208 |
T |
|
| Q |
514 |
acttaccgaaaaatcaatgtatttag |
539 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25167207 |
acttaccgaaaaatcaatgtatttag |
25167182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 510
Target Start/End: Complemental strand, 25167100 - 25167053
Alignment:
| Q |
463 |
aacataatctaaacaacattcacaactactacgttcatatataacatc |
510 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
25167100 |
aacataatctaaacaacattcacaacaactacattcatctataacatc |
25167053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 22495537 - 22495505
Alignment:
| Q |
456 |
cattcacaacataatctaaacaacattcacaac |
488 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
22495537 |
cattcacaacacaatctaaacaacattcacaac |
22495505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 4719835 - 4719867
Alignment:
| Q |
456 |
cattcacaacataatctaaacaacattcacaac |
488 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
4719835 |
cattcacaacacaatctaaacaacattcacaac |
4719867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University