View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9233_low_4 (Length: 509)
Name: NF9233_low_4
Description: NF9233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9233_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 6241210 - 6241606
Alignment:
| Q |
1 |
acgctttgcctcaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaattttg |
100 |
Q |
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| T |
6241210 |
acgctttgcctgaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaattttg |
6241309 |
T |
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| Q |
101 |
tagggcaatagctggaagattttatcgatctgcaacacaaaacaaaatttcataaagttatgcaagatagaacatgaactagacaccattgcattaaatt |
200 |
Q |
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| T |
6241310 |
tagggcaatagctggaagattttatcgatctgcaacacaaaacaaaatttcataaagttatgcaagatagaacatgaactagacaccattgcattaaatt |
6241409 |
T |
|
| Q |
201 |
cagaaagtaaagctctccttttatttaacatgttattagcaaaaaaggaaatccatgcttcaaagttcaaactgataagatgtatttataaacaatataa |
300 |
Q |
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| T |
6241410 |
cagaaagtaaagctctcctttttttaaaaattttattagcaaaaaaggaaatccatgcttcaaagttcaaactgataagatgtgtttataaacaatataa |
6241509 |
T |
|
| Q |
301 |
tttgtaaagtaaaaacaagtggaaatcaagtatatcgaacaaactttttcctcgaaatcacatgaaagcatttcatcaacctcagccaaaacgacca |
397 |
Q |
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| T |
6241510 |
tttgtaaagtaaaaacaaatggaaatcaagtatatcgaacaaaccttttcctcgaaatcacatgaaagcatttcatcaacctcatccataacgacca |
6241606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 6249628 - 6249748
Alignment:
| Q |
18 |
tcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaattttgtagggcaatagctggaa |
117 |
Q |
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| T |
6249628 |
tcactggcttattcatgaacttcctagtaatctcaagggcttcaggtggcattgtagcagaaaatactccaacctgaattttgcctggcagttgctggaa |
6249727 |
T |
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| Q |
118 |
gattttatcgatctgcaacac |
138 |
Q |
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||| | || |||||||||||| |
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| T |
6249728 |
gatgtcatagatctgcaacac |
6249748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 17545245 - 17545089
Alignment:
| Q |
3 |
gctttgcctcaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaattttgta |
102 |
Q |
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| T |
17545245 |
gctttgcctgaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagcagagattactccaacctgaattttgca |
17545146 |
T |
|
| Q |
103 |
gggcaatagctggaagattttatcgatctgcaacacaaaacaaaa-tttcataaagt |
158 |
Q |
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| T |
17545145 |
tggtagtagcttgaagatttcatcgatctgcaacaccaatcaaaattttcataaagt |
17545089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 240 - 480
Target Start/End: Complemental strand, 17545049 - 17544813
Alignment:
| Q |
240 |
caaaaaaggaaatccatgcttc-aaagttcaaactgataagatgtatttataaacaatataatttgtaaagtaaaaacaagtggaaatcaagtatatcga |
338 |
Q |
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||||||||||||| ||||||| ||||||||||||| |||||||| | |||||||||| |||| ||||| |||||| | ||||||||||| || || |
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| T |
17545049 |
caaaaaaggaaattcatgctttgaaagttcaaactgttaagatgtgtatataaacaatggaattagtaaa-taaaaaaa--tggaaatcaagcatgtc-- |
17544955 |
T |
|
| Q |
339 |
acaaactttttcctcgaaatcacatgaaagcatttcatcaacctcagccaaaacgaccatcattatgcaaccgaggcgagtgcacacggtcggcagcatg |
438 |
Q |
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|||||| || |||| |||| || ||||||||||| |||||||||| ||| ||| | |||| |||||||| | |||||||| | | | || |||||||| |
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| T |
17544954 |
acaaaccttatccttgaaaccaagtgaaagcatttgatcaacctcatccataacaaacatctttatgcaatctaggcgagtacgccccctctgcagcatg |
17544855 |
T |
|
| Q |
439 |
tcatacgcacacgacggagtaccaacaataatgtgaacacca |
480 |
Q |
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| T |
17544854 |
tcatacacacacctcggagtaccaacaataatgtgaacacca |
17544813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 42718691 - 42718604
Alignment:
| Q |
13 |
aattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaattttg |
100 |
Q |
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| T |
42718691 |
aattctcactggcttattcatgaacttccttgtgatctccagagcctctggaggcattgtagcagagaacactccaacctgaattttg |
42718604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 17533738 - 17533837
Alignment:
| Q |
18 |
tcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaattttgtagggcaatagctggaa |
117 |
Q |
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||||||| || |||||||||||||| || |||||||| || ||||| |||||||||| ||||| ||||| || ||||| || | ||||| |||||||| |
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| T |
17533738 |
tcacaggtttgttcatgaacttccttgtgatctcaagtgcctcaggaggcattgtagcagagaaaactccgacttgaatcttagatggcaacagctggaa |
17533837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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