View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9234_low_1 (Length: 522)
Name: NF9234_low_1
Description: NF9234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9234_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 2151808 - 2152119
Alignment:
| Q |
18 |
gttaatttgattttcttctcttaattggaaagggaactcnnnnnnnngttccgacgagtttccacaatgtctcttgtcacaaattggagctgtgcttttt |
117 |
Q |
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| T |
2151808 |
gttaatttgattttcttttcttaattggaatgggaactcaaaaaaaagatccgacgagtttccacaatgtctcttgtcacacattggagctgtgcttttt |
2151907 |
T |
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| Q |
118 |
gttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt---------ggtgtgaatcactaaattg |
208 |
Q |
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| T |
2151908 |
gttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagtggtgcttgaggtgtgaatcactaaattg |
2152007 |
T |
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| Q |
209 |
aaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttgga |
308 |
Q |
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| T |
2152008 |
aaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttgga |
2152107 |
T |
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| Q |
309 |
ttttttatatat |
320 |
Q |
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| T |
2152108 |
ttatatatatat |
2152119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
96 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
185 |
Q |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
103 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
189 |
Q |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 2146400 - 2146433
Alignment:
| Q |
20 |
taatttgattttcttctcttaattggaaagggaa |
53 |
Q |
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| T |
2146400 |
taatttgattttcttctcttaattggaaagggaa |
2146433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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