View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9235_low_1 (Length: 838)
Name: NF9235_low_1
Description: NF9235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9235_low_1 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 18 - 828
Target Start/End: Complemental strand, 43853470 - 43852655
Alignment:
| Q |
18 |
ccaaggagataccagcaatggagttgaagttgggaagatgagcaagaataaaatgaacagaggcaaatatcatgatgaaataagtagttttcattgattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43853470 |
ccaaggagataccagcaatggagttgaagttgggaagatgagcaagaataaaatgaacagaggcaaatatcatgatgaaataagtagttttcattgattt |
43853371 |
T |
|
| Q |
118 |
gcaannnnnnnnacacaccaaatcatgaattttctgcagtgactttcccccggtgaccatgtaaacaatgtccacaccaacttcacatatcaactgttgt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43853370 |
gcaattttttttacacaccaaatcatgaattttctgcagtgactttcccccggtgaccatgtaaacaatgtccacaccaacttcacatatcaactgttgt |
43853271 |
T |
|
| Q |
218 |
ggcacgacaatccagagtccaagcttttctccaaatgcttcctgccccaactcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43853270 |
ggcacgacaatccagagtccaagcttttctccaaatgcttcctgccccaactcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaa |
43853171 |
T |
|
| Q |
318 |
ccatttgccatagagtgtagagggtgattatccaagataagattagaatcaccacaccaggacccctgcaattcgacattgtaaaacataaacaaactta |
417 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43853170 |
ccatttgccatagagtgtagagggtgattatccatgataagattagaatcaccacaccaggacccctgcaattcgacattgtaaaacataaacaaactta |
43853071 |
T |
|
| Q |
418 |
tgtttcattgtgatttaaacgtccttgagatgtcaaattagtggtaatagtttcacaattattttttgtgttaacccttcggtcctaatgggaaagaggt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43853070 |
tgtttcattgtgatttaaacgtccttgagatgtcaaattagtggtaatagtttcacaattattttttgtgttaacccttcggtcctaatgggaaagaggt |
43852971 |
T |
|
| Q |
518 |
cctgataatccaaagtttggtcaggagataagtaagttttgactaagaaatgttcatccaggaatcaaacttagattctcctgaacgattcgtcattcaa |
617 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43852970 |
cctgataatccaaagtttggtcagaagataagtaagttttgactaaaaaatgttcatccaggaatcaaacttagattctcctgaacgattcgtcattcaa |
43852871 |
T |
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| Q |
618 |
ttcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggaaggaggttatataattgtcattaattagtgtcacttcga |
717 |
Q |
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| T |
43852870 |
ttcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggagggaggttatataattgtcattaattagtgtcacttcga |
43852771 |
T |
|
| Q |
718 |
ctaataaaaactttcatcttccttgttctttttt-----nnnnnnnnncaagaagagattaagaatatatatgatcttatttcaagttgttttcacttta |
812 |
Q |
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|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43852770 |
ctaataaaaactttcatcttccatgttctttttttaaaataaaaaaaaaaaaaagagattaagaatatatatgatcttatttcaagttgttttcacttta |
43852671 |
T |
|
| Q |
813 |
tttcaatgagaataat |
828 |
Q |
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|||||||||||||||| |
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| T |
43852670 |
tttcaatgagaataat |
43852655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 41382272 - 41382336
Alignment:
| Q |
287 |
cgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatcca |
351 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||| |
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| T |
41382272 |
cgttttcccggaaccatctcatgcatctcaaccatttgccacagggtgtagagagtgatgatcca |
41382336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 211 - 338
Target Start/End: Original strand, 38827337 - 38827464
Alignment:
| Q |
211 |
ctgttgtggcacgacaatccagagtccaagcttttctccaaatgcttcctgccccaactcatggtacctatcaaaccgttttcctggaaccatttcatgc |
310 |
Q |
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||||||||| || ||||||||||| || || || |||||||| ||||| || ||||||||||| |||||||| || | ||||| ||||| ||||||||| |
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| T |
38827337 |
ctgttgtggaaccacaatccagagacccagtttctctccaaaggcttcttgacccaactcatgatacctatccaatctctttccgggaactatttcatgc |
38827436 |
T |
|
| Q |
311 |
atttcaaccatttgccatagagtgtaga |
338 |
Q |
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|| |||||||||||||||| |||||||| |
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| T |
38827437 |
atctcaaccatttgccatatagtgtaga |
38827464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 360
Target Start/End: Original strand, 3276 - 3469
Alignment:
| Q |
167 |
ccggtgaccatgtaaacaatgtccacaccaacttcacatatcaactgttgtggcacgacaatccagagtccaagcttttctccaaatgcttcctgcccca |
266 |
Q |
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|||||||||||||||||||||| ||| |||||||| || | ||||| ||||| ||||| | || || | |||||| ||||| || | || |||| |
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| T |
3276 |
ccggtgaccatgtaaacaatgttcaccccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtccca |
3375 |
T |
|
| Q |
267 |
actcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccaagataagat |
360 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | || || || ||||| ||||| |||||||| |
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| T |
3376 |
gttcatggtacctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagat |
3469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 7979423 - 7979505
Alignment:
| Q |
269 |
tcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatcca |
351 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||||| ||||| ||||| |
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| T |
7979423 |
tcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatcca |
7979505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 8031954 - 8031896
Alignment:
| Q |
269 |
tcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgcca |
327 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| |||||||||||| |||||||||||||| |
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| T |
8031954 |
tcatggtatctatcaaaacgttttcccggaatcatttcatgcatctcaaccatttgcca |
8031896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 7971873 - 7971913
Alignment:
| Q |
287 |
cgttttcctggaaccatttcatgcatttcaaccatttgcca |
327 |
Q |
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| T |
7971873 |
cgttttcctggaaccatctcatgcatctcaaccatttgcca |
7971913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 8041815 - 8041775
Alignment:
| Q |
287 |
cgttttcctggaaccatttcatgcatttcaaccatttgcca |
327 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||| |
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| T |
8041815 |
cgttttcctggaaccatctcatgcatctcaaccatttgcca |
8041775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 34409286 - 34409203
Alignment:
| Q |
268 |
ctcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatcca |
351 |
Q |
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|||||| ||||| ||||| | | ||||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
34409286 |
ctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaacaatgtgattatcca |
34409203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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