View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9235_low_2 (Length: 512)
Name: NF9235_low_2
Description: NF9235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9235_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 591931 - 592406
Alignment:
| Q |
19 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
591931 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
592030 |
T |
|
| Q |
119 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcttcctctgatttgtcggcactttttcgtgaaaatatgatgtttgcaaatatttcag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
592031 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgttctctgatttgtcggcactttttcgtgaagatatgatgtttgcaaatatttcag |
592130 |
T |
|
| Q |
219 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagagaacactgattggaagcattccgttatcgagatcgtggaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
592131 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagagaacactgattggaagcattccattatcgagatcgtggaa |
592230 |
T |
|
| Q |
319 |
caatgcagagacatcatcgaagagcttgtcacgaacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592231 |
caatgcagagacatcatcgaagagcttgtcacgaacttcacgacccaaaaggcatctactggctgtcaagatgatcagatgctcaagctcatacttcaaa |
592330 |
T |
|
| Q |
419 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttcagaaaacaacacagcc |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
592331 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttgagaaaacaacacagcc |
592406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Complemental strand, 580496 - 580032
Alignment:
| Q |
19 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580496 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
580397 |
T |
|
| Q |
119 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcttcctctgatttgtcggcactttttcgtgaaaatatgatgtttgcaaatatttcag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
580396 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgtcctctgatttgtcggcaatttttcgtgaagatatgatgtttgcaaatatttcag |
580297 |
T |
|
| Q |
219 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagagaacactgattggaagcattccgttatcgagatcgtggaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580296 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggtatgggaagagaacactgattggaagcattccgttatcgagatcgtggaa |
580197 |
T |
|
| Q |
319 |
caatgcagagacatcatcgaagagcttgtcacgaacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580196 |
caatgcagagacatcatcgaagagcttgtcacgaacttcacgacccaagagacatctactggctgtcaagatgatcagatgctcaagctcatacttcaaa |
580097 |
T |
|
| Q |
419 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttcagaaa |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
580096 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttgagaaa |
580032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 37434232 - 37434150
Alignment:
| Q |
70 |
gaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcact |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
37434232 |
gaaaagagcggcaatgaggagtcctgtgacttcagcttcggttgtaaggcggttgtctttgtattttgagtcaatgaagcact |
37434150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 37434262 - 37434230
Alignment:
| Q |
20 |
agatatgctccggtccaagtggaggtgattgaa |
52 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
37434262 |
agatatgctctggtccaagtggaggtgattgaa |
37434230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University