View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9235_low_3 (Length: 264)
Name: NF9235_low_3
Description: NF9235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9235_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 10193527 - 10193300
Alignment:
| Q |
19 |
cgtggtgtgtcatgtttatcggtttatatctttttcattcatagataattttatttgtgagctaaatgacaccagagaagttttaagaaaattatcataa |
118 |
Q |
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| T |
10193527 |
cgtggtgtgtcatgtttatcggtttatatctttttcattcatagataattttatttgtgagctaaatgacaccagagaagttttaagaaaattatcataa |
10193428 |
T |
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| Q |
119 |
ccactaacttattgttatttatcctttttagttgaagtgcgaagatatatatttgaagatatatttgaggtgtttgttaatatcatccatgatcacaatc |
218 |
Q |
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| T |
10193427 |
ccactaacttattgttatttatcctttttagttgaagtgcgaagatatatatttgaagatatatttgaggtgtttgttaatatcatccatgatcacaatc |
10193328 |
T |
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| Q |
219 |
acagacatattgagattatatgttttgg |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10193327 |
acagacatattgagattatatgttttgg |
10193300 |
T |
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