View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9235_low_4 (Length: 255)
Name: NF9235_low_4
Description: NF9235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9235_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 13868467 - 13868223
Alignment:
| Q |
1 |
tttgataggtttagttatgctttaaggaattctgtcacaagcagtagtatgcataaatcaacataagtggaaatcagatttttcatttccaatattgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13868467 |
tttgataggtttagttatgctttaaggaattctgtcacaagcagtagtatgcataaatcaacataagtggaaatcagatttttcatttccaatattgtca |
13868368 |
T |
|
| Q |
101 |
catggaatgttttcaaaattaagtaacacgaggattaatgtcaaatcaacatgtaataggagaaataagccatccataaatgactctttaacatacattt |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13868367 |
cattgaatgttttcaaaattaagtaacacgaggattaatgtcaaatcaacatgtaataggagaaataagccatgcataaatgactctttaacatacattt |
13868268 |
T |
|
| Q |
201 |
tagtaaaataaccctaattacattcaatcaaccccaacaccaaac |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13868267 |
tagtaaaataaccctaattacattcaatcaaccccaacgccaaac |
13868223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University