View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9235_low_7 (Length: 213)
Name: NF9235_low_7
Description: NF9235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9235_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 30058482 - 30058285
Alignment:
| Q |
1 |
cacacaagggcggggtcgacaaataaagggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtccccggtggt |
100 |
Q |
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| T |
30058482 |
cacacaagggtggggtcgacaaataaatggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtcc--ggtggt |
30058385 |
T |
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| Q |
101 |
ggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttttattggtcttttgtatttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30058384 |
ggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtacacaatagaaagtctgatcatcaaggtttttattggtcttttgtatttatt |
30058285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 30714879 - 30715066
Alignment:
| Q |
1 |
cacacaagggcggggtcgacaaataaagggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtccccggtggt |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30714879 |
cacacaagggtggggtcgacaaataaagggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtcc--ggtggt |
30714976 |
T |
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| Q |
101 |
ggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttttattggtcttt |
190 |
Q |
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| T |
30714977 |
ggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttttattggtcttt |
30715066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 30398655 - 30398554
Alignment:
| Q |
79 |
gtgacaatgagtccccggtggtggta--gaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggt |
176 |
Q |
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||||||||||||||| ||||| |||| |||| || || |||||| || ||||| |||||||||||||||||| || ||| |||||||||||||||||| |
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| T |
30398655 |
gtgacaatgagtccctggtgggggtatcgaggattgcgattttgacaatcggggcatgggtcggagctctgtgcccattagcaagtctgatcatcaaggt |
30398556 |
T |
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| Q |
177 |
tt |
178 |
Q |
| |
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|| |
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|
| T |
30398555 |
tt |
30398554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 30679157 - 30679202
Alignment:
| Q |
134 |
gggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttt |
179 |
Q |
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| T |
30679157 |
gggtcggagctcagtgcacagtagaaagtctgatcatcaaggtttt |
30679202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 29870486 - 29870349
Alignment:
| Q |
42 |
cctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtccccggtggtggta--gaggttttcgcttttgatcattggggcgtgggtcg |
139 |
Q |
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|||||||||||||| || || || ||||||||||| ||||||| |||||| |||||||||| |||| || || ||||||| | ||||||||||| |
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| T |
29870486 |
cctaatgatgaagagaacgtcttttggagtggaggaggtgacaacgagtcc--ggtggtggtatcgaggattgcgattttgatagtgagggcgtgggtca |
29870389 |
T |
|
| Q |
140 |
gagctctgtgcacaatagaaagtctgatcatcaaggtttt |
179 |
Q |
| |
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||||| |||| || ||| || |||||||||||||||||| |
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| T |
29870388 |
gagctgcgtgcccattagcaactctgatcatcaaggtttt |
29870349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 30434030 - 30433997
Alignment:
| Q |
134 |
gggtcggagctctgtgcacaatagaaagtctgat |
167 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
30434030 |
gggtcggagctcagtgcacaatagaaagtctgat |
30433997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 595872 - 595929
Alignment:
| Q |
106 |
aggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtc |
163 |
Q |
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|||||| |||||||||| || ||||||| ||||||||||| |||| || ||||||||| |
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| T |
595872 |
aggtttgcgcttttgataatcggggcgttggtcggagctccgtgcccattagaaagtc |
595929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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