View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9236_low_1 (Length: 398)
Name: NF9236_low_1
Description: NF9236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9236_low_1 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 101 - 398
Target Start/End: Original strand, 27774770 - 27775068
Alignment:
| Q |
101 |
taccgtgataagatagataagctacacaaagagtt-aggtcacatatcatattgaattatgtgcatggcgtatgttcaaactgaatcacaccaagaaatt |
199 |
Q |
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| T |
27774770 |
taccgtgataagatagataagctacacaaagagtttaggtcacatatcatattgaattatgtgcatggcgtatgttcaaactgaatcacaccaagaaatt |
27774869 |
T |
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| Q |
200 |
gaacaagagttcccatagctgcagtctcacccctttgtagcagaagaagtgctagataattctcgtttcataagcttaattcccgagccaatttcctcaa |
299 |
Q |
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| T |
27774870 |
gaacaagaaatcccatagctgcagtctcacccctttgtagcagaaaaagtgctagataattctcgtttcataagcttaattcccgagccaatttcctcaa |
27774969 |
T |
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| Q |
300 |
agcgaaggtagacactttgaggaaatcggcacgtggattaagcagatggaacgaacatgaactagcacgttttgtagtaaaaagacatggaacttcagc |
398 |
Q |
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| T |
27774970 |
agcgaaggtagacactttgaggaaatcggcacgtggattaagcaaatggaacgaacatgaactagcactttttgtagtaaaaagagatggaacttcagc |
27775068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 27774684 - 27774734
Alignment:
| Q |
15 |
agacaatatataaagccggcatttgggaggcagaggggaacaaggtcttgg |
65 |
Q |
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| T |
27774684 |
agacaatatataaagccggcatttgggaggcagaggggaacaaggtcttgg |
27774734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 27802226 - 27802129
Alignment:
| Q |
203 |
caagagttcccatagctgcagtctcacccctttgtagcagaagaagtgctagataattctcgtttcataagcttaattcccgagccaatttcctcaaag |
301 |
Q |
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| T |
27802226 |
caagagctcccatagctgcagtcccacctctttgtagcaga-gaaatgctagttcattctcgttccatacacttaattcccaagccaatttcctcaaag |
27802129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 27771530 - 27771594
Alignment:
| Q |
303 |
gaaggtagacactttgaggaaatcggcacgtggattaagcagatggaacgaacatgaactagcac |
367 |
Q |
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| T |
27771530 |
gaaggtagatagtttgaggaaattggcacatggattaagcagatggaacgaacatgaactagcac |
27771594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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