View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9237_low_1 (Length: 706)
Name: NF9237_low_1
Description: NF9237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9237_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 122 - 419
Target Start/End: Complemental strand, 18382821 - 18382530
Alignment:
| Q |
122 |
tatgggagaaaagcttaccaacttgtggaagaatttgcaagtggaaaaaatggccagctca--caccatttaaggtaagcccggcccggtcttcattttt |
219 |
Q |
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|||| ||||||||||| | |||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||| | ||||||||||| |
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| T |
18382821 |
tatgtgagaaaagcttgcgaacttgtgaaagaatttgcaactggaaaaaagggccagctcagacaccatttaaggtaatac--------tcttcattttt |
18382730 |
T |
|
| Q |
220 |
cagcttgacactcattattattttttaattgttggtgtatcttggaacctgcttgtgttgcagaaaataattgcatgattgatttgattgcaaaccctat |
319 |
Q |
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||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
18382729 |
cagctggacactaattattattttttaattggtggtgtatcttggaacctgcttgtgttgcagaaaataattgcatgattgatttgatcgtaaaccctat |
18382630 |
T |
|
| Q |
320 |
tttggtacgcaacttttaatgaattttatatttgaacatttaggaaaactcggcactcttgcataaaaccgatttaagatgttaccacactatgccatca |
419 |
Q |
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| T |
18382629 |
tttggtacgcaacttttaatgaattttatgtttgaagttttaggaaaactcggcactcttgcataaaatacatttaagatgttaccacactatgccatca |
18382530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 18386991 - 18386819
Alignment:
| Q |
21 |
tagtgttttgagcaattactttgtgtagttttgcattcatagttgtaatatgaagggaaattcttaatcctgagggtagtcctgtgaaaatactcaacat |
120 |
Q |
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|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
18386991 |
tagttttttgagcaattaatctgtgtagttttgcattcatagttgtaatatgaagggaaattcttaatcccgagggtagtcctgtgaaaatactcctcat |
18386892 |
T |
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| Q |
121 |
gtatgggagaaaagcttaccaacttgtggaagaatttgcaagtggaaaaaatggccagctcacaccatttaag |
193 |
Q |
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| T |
18386891 |
gtatgggagaaaagcttaccaagttgtggaagaatttgcaagtggaaaaaatggccagctcacaccatttaag |
18386819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 514 - 672
Target Start/End: Complemental strand, 18382465 - 18382307
Alignment:
| Q |
514 |
atctttatattgttgtgattatgttcttgatttggcttgatactttttccaatgatcttgtagaatgacttgtttggccaagtagttgcagaatgcagcc |
613 |
Q |
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||||||||||| ||| ||||||||||| || ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18382465 |
atctttatattcatgtaattatgttcttccttcggcttgatactatttacaatgatcttttagaatgacttgtttggccaagtagttgcagaatgcagcc |
18382366 |
T |
|
| Q |
614 |
gacatcaccttgagttactatcgttgataaagtaatggttaaaatatgtcgtaattttc |
672 |
Q |
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| T |
18382365 |
aacatcaccttgaacttcaatccttgataaagtaatggttaaaatatgtcgtaattttc |
18382307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 18386796 - 18386737
Alignment:
| Q |
304 |
tgattgcaaaccctattttggtacgcaacttttaatgaattttatatttgaacatttagg |
363 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18386796 |
tgattgtaaaccctattttggtacgcaacttttaatgaattttatatttgaacttttagg |
18386737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 18382864 - 18382818
Alignment:
| Q |
26 |
ttttgagcaattactttgtgtagttttgcattcatagttgtaatatg |
72 |
Q |
| |
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|||||||| ||| || ||||| ||||||||||||||||||||||||| |
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| T |
18382864 |
ttttgagctattgctctgtgttgttttgcattcatagttgtaatatg |
18382818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 110 - 315
Target Start/End: Original strand, 45666 - 45868
Alignment:
| Q |
110 |
atactcaacatgtatgggagaaaagcttaccaacttgtggaagaatttgcaagtggaaaaaatggccagctcacaccatttaaggtaagcccggcccggt |
209 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||| |||| || ||||||||||||||||| |||| | || | | |
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| T |
45666 |
atactcagcatgtttgggagaaaagcttgccaacttgtgaaagaatttgcaagtggagaaaagggtcagctcacaccatttaatgtaa----gtccagat |
45761 |
T |
|
| Q |
210 |
cttcatttttcagcttgacactcattattattttttaattgttggtgtatcttggaacctgcttgtgttgcagaaaat-aattgcatgattgatttgatt |
308 |
Q |
| |
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|||| |||||||| | ||| ||||||||||| |||| ||||||||| ||| || |||| ||||||||||| |||||| | ||||||||||||||||||| |
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| T |
45762 |
cttcgtttttcagttagacgctcattattatattttgattgttggtttatgttagaacttgcttgtgttgaggaaaatgatttgcatgattgatttgatt |
45861 |
T |
|
| Q |
309 |
gcaaacc |
315 |
Q |
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| T |
45862 |
gtaaacc |
45868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 515 - 626
Target Start/End: Original strand, 46093 - 46204
Alignment:
| Q |
515 |
tctttatattgttgtgattatgttcttgatttggcttgatactttttccaatgatcttgtagaatgacttgtttggccaagtagttgcagaatgcagccg |
614 |
Q |
| |
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||||||| ||||||||| ||||| |||| ||| |||| |||||||| |||||||||||||||| |||||||||| |||||||||| ||| ||||||| |
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| T |
46093 |
tctttatgttgttgtgaatatgtgcttgcttttacttgctacttttttcaatgatcttgtagaaagacttgtttgagcaagtagttggagagtgcagcca |
46192 |
T |
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| Q |
615 |
acatcaccttga |
626 |
Q |
| |
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|||||||||||| |
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| T |
46193 |
acatcaccttga |
46204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 110 - 315
Target Start/End: Original strand, 21359108 - 21359310
Alignment:
| Q |
110 |
atactcaacatgtatgggagaaaagcttaccaacttgtggaagaatttgcaagtggaaaaaatggccagctcacaccatttaaggtaagcccggcccggt |
209 |
Q |
| |
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||||||| |||| |||||||||||||| |||||||||| |||||||||| |||||| |||| || ||||||||||||||||| ||||| || | | |
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| T |
21359108 |
atactcagtatgtttgggagaaaagcttgccaacttgtgaaagaatttgcgagtggagaaaagggtcagctcacaccatttaatgtaagtccaga----t |
21359203 |
T |
|
| Q |
210 |
cttcatttttcagcttgacactcattattattttttaattgttggtgtatcttggaacctgcttgtgttgcagaaaat-aattgcatgattgatttgatt |
308 |
Q |
| |
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||||||||||||| | ||||||| ||||||| |||||||||||||| ||| || |||| ||||||||||| ||||||| | || |||||||||||||||| |
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| T |
21359204 |
cttcatttttcagttagacactcgttattatattttaattgttggtttatgttagaacttgcttgtgttgaagaaaatgattttcatgattgatttgatt |
21359303 |
T |
|
| Q |
309 |
gcaaacc |
315 |
Q |
| |
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| ||||| |
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| T |
21359304 |
gtaaacc |
21359310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 514 - 655
Target Start/End: Original strand, 21359513 - 21359654
Alignment:
| Q |
514 |
atctttatattgttgtgattatgttcttgatttggcttgatactttttccaatgatcttgtagaatgacttgtttggccaagtagttgcagaatgcagcc |
613 |
Q |
| |
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|||||||| ||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| || |
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| T |
21359513 |
atctttatgttgttgtgaatatgtgattgcttttacttgatactttttccaatgatcttgtagaaagacttgtttgagcaagtagttggagaatgcaacc |
21359612 |
T |
|
| Q |
614 |
gacatcaccttgagttactatcgttgataaagtaatggttaa |
655 |
Q |
| |
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|||||||||||| | | || ||||||| ||||||||||| |
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|
| T |
21359613 |
aacatcaccttgaccttcagtccttgataaggtaatggttaa |
21359654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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