View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9237_low_10 (Length: 239)
Name: NF9237_low_10
Description: NF9237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9237_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 39710528 - 39710364
Alignment:
| Q |
59 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
158 |
Q |
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| T |
39710528 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
39710429 |
T |
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| Q |
159 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcagcattgatacaatcaa |
223 |
Q |
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| T |
39710428 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcaacattgatacaatcaa |
39710364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 39691597 - 39691761
Alignment:
| Q |
59 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
158 |
Q |
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| T |
39691597 |
tggattgaacttacaaagtatgtcgttgattcgaaacctagtcctggtcgcccaattattgtagtagtgtcgtgagcttttgactgcccaaccatggttg |
39691696 |
T |
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| Q |
159 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcagcattgatacaatcaa |
223 |
Q |
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| T |
39691697 |
ccaccgacattaaacttgtatgcagatgacaatgaagtgctgagaactagcattgatacaatcaa |
39691761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 39703924 - 39703760
Alignment:
| Q |
59 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
158 |
Q |
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| T |
39703924 |
tggattgaacttacaaagtatgtcgttgattcgaaacctagtcctggtcgcccaattattgtagtagtgtcgtgagcttttgactgcccaaccatggttg |
39703825 |
T |
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| Q |
159 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcagcattgatacaatcaa |
223 |
Q |
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||||| ||||||||| |||||| ||| || ||||||||||| |||| ||||||||||||||||| |
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| T |
39703824 |
ccaccgacattaaacttgtatgcagatgacaatgaagtgctgagaactagcattgatacaatcaa |
39703760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 51319253 - 51319214
Alignment:
| Q |
59 |
tggattgaacttacgaagtgtgtcgttgatttgaaaccta |
98 |
Q |
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| T |
51319253 |
tggattgaacttacaaagcgtgtcgttgatttgaaaccta |
51319214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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