View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9237_low_2 (Length: 574)
Name: NF9237_low_2
Description: NF9237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9237_low_2 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 563
Target Start/End: Complemental strand, 17006560 - 17006016
Alignment:
| Q |
17 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17006560 |
catcatgactcttcaacattcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatccggcactgtgatattctttaa |
17006461 |
T |
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| Q |
117 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17006460 |
aattgttaaaaattccctcttacatttaccagtcaaagtaaaaattgtcggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
17006361 |
T |
|
| Q |
217 |
acttcaaggtctcttcgagcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatgtgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17006360 |
acttcaaggtctcttcgagcatcaacatggtctttattctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgca |
17006261 |
T |
|
| Q |
317 |
tcgggtcaagattatgacgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattg |
416 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17006260 |
tcgggtcaagattatgacgcaaaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttctagattggagggtcatcttttgtagattg |
17006161 |
T |
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| Q |
417 |
cctcttgcctttccnnnnnnnnnctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttac |
516 |
Q |
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| T |
17006160 |
cctcttgcctgtcc--tttttttctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttac |
17006063 |
T |
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| Q |
517 |
caaaaatgacctttatgttttcaacctgttcaagaacttgatgtcca |
563 |
Q |
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| T |
17006062 |
caaaaatgacctttatgttttcaacctgttgaagaacttgatgtcca |
17006016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 2537 - 3050
Alignment:
| Q |
17 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2537 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
2636 |
T |
|
| Q |
117 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2637 |
aattgttaaaaaatccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
2736 |
T |
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| Q |
217 |
acttcaaggtctcttcgagcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatgtgca |
316 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2737 |
acttcaaggtctctacgagcatcaacatggtctttactctttgaactatcgttaagcaaagtatatatgatattatccaacacatttttctcgatatgca |
2836 |
T |
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| Q |
317 |
tcgggtcaagattatgacgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2837 |
tcgggtcaagattatgacgcagaagattgtccttccaatatggaagttcaaagaatatgcttttcttcttccagattggagggtcatcttttgtagattg |
2936 |
T |
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| Q |
417 |
cctcttgcctttccnnnnnnnnnctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttac |
516 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2937 |
cctcttgcctgtcc--tttttttctggtttggagggtcaccttgtgtaggttgtttcttgccttttctttttcccaaccctgctttctttggctttttac |
3034 |
T |
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| Q |
517 |
caaaaatgacctttat |
532 |
Q |
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|||||||||||||||| |
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| T |
3035 |
caaaaatgacctttat |
3050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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