View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9237_low_3 (Length: 538)
Name: NF9237_low_3
Description: NF9237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9237_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 10078545 - 10079074
Alignment:
| Q |
1 |
aggcgcaacagtctgaagaacaattacagcagcaacagcagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaagctgctgctatgca |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078545 |
aggcgcaacagtctgaagatcaattacagcagcaacaacagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaagctgctgctatgca |
10078644 |
T |
|
| Q |
101 |
agtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggacttctccaccagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078645 |
agtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggacttctccaccagaac |
10078744 |
T |
|
| Q |
201 |
tctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttcatgcagtacagtgc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078745 |
tctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttcatgcagtacagtgc |
10078844 |
T |
|
| Q |
301 |
cacaggcacaaccaaactcgtccccttttcattcaccaacaccgtcctcatctaacaacaacccacaaacttctcaccctggcttaacatctgcaaatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10078845 |
cacaggcacaaccaaactcgtccccttttcattcaccaacaccgtcctcatctaacaacaacccgcaaacttctcaccctggcttaacatctgcaaatca |
10078944 |
T |
|
| Q |
401 |
catgggtacagtaaactcaccagctaatatttccatgcaacaacagcaggcatctgtttctggtgaagccgaccctagtaatgatgctcagaactcggtc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10078945 |
catgggtacagtaaactcaccagctaatatttccatgcaacaacagcaggcatctgtttctggtgaagctgaccctagtaatgatgctcagaactcggtc |
10079044 |
T |
|
| Q |
501 |
cagaaaataattcacgacatgatgatgtcc |
530 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
10079045 |
cagaaaataattcacgacatgatgatgtcc |
10079074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 57 - 370
Target Start/End: Complemental strand, 40776318 - 40776005
Alignment:
| Q |
57 |
aactcaaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctg |
156 |
Q |
| |
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||||||||||| ||||||||| | |||||||||||| | |||||| | |||| | ||||||| |||| |||||||||| |||||| || || || | |
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| T |
40776318 |
aactcaaatggcgatcaaaacccagtgcaagctgcttccatgcaaattgcttccagcaatggtatggttagtgtaaatagttctgtcaactcggcgtccg |
40776219 |
T |
|
| Q |
157 |
catcgaccaccacaagcaccattgttggacttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggagg |
256 |
Q |
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|||| || ||||||||||| |||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40776218 |
catcaacaaccacaagcactattgttggacttctccaccaaaactctgtgaattctagaca---aaattcaatgaacaatgcaagcagtccatatggagg |
40776122 |
T |
|
| Q |
257 |
tagttcagctcatattccatccccaggttcatgcagtacagtgccacaggcacaaccaaactcgtccccttttcattcacca---acaccgtcctcatct |
353 |
Q |
| |
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|| ||| | ||| ||||||||||| ||||| | |||||| ||||||||||| || |||||||| ||||||||||| |||||| ||||| ||||||||| |
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| T |
40776121 |
taattctgttcagattccatcccctggttcctccagtactgtgccacaggcccagccaaactcatccccttttcagtcaccacctacaccatcctcatct |
40776022 |
T |
|
| Q |
354 |
aacaacaacccacaaac |
370 |
Q |
| |
|
|| ||| ||||||||| |
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|
| T |
40776021 |
aataaccccccacaaac |
40776005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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