View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9237_low_4 (Length: 438)

Name: NF9237_low_4
Description: NF9237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9237_low_4
NF9237_low_4
[»] chr1 (12 HSPs)
chr1 (1-438)||(18304896-18305334)
chr1 (393-438)||(25146853-25146898)
chr1 (396-438)||(19010031-19010073)
chr1 (401-438)||(16125543-16125580)
chr1 (394-438)||(30619075-30619119)
chr1 (393-428)||(9327310-9327345)
chr1 (393-427)||(9352159-9352193)
chr1 (393-438)||(9955120-9955165)
chr1 (393-438)||(17056084-17056129)
chr1 (393-438)||(21846353-21846398)
chr1 (393-438)||(47785791-47785836)
chr1 (394-438)||(23528656-23528700)
[»] chr8 (11 HSPs)
chr8 (393-438)||(477132-477177)
chr8 (393-438)||(11879599-11879644)
chr8 (393-438)||(11897015-11897060)
chr8 (389-437)||(31424158-31424206)
chr8 (395-438)||(9036758-9036801)
chr8 (393-438)||(5922048-5922093)
chr8 (393-438)||(23136348-23136393)
chr8 (396-438)||(15294672-15294714)
chr8 (396-438)||(15475041-15475083)
chr8 (393-438)||(24056653-24056698)
chr8 (394-438)||(17646993-17647037)
[»] chr6 (12 HSPs)
chr6 (393-438)||(6943545-6943590)
chr6 (394-438)||(15528195-15528239)
chr6 (392-438)||(7223517-7223563)
chr6 (393-438)||(17103201-17103246)
chr6 (393-438)||(17543825-17543870)
chr6 (394-438)||(7918466-7918510)
chr6 (391-438)||(12245106-12245153)
chr6 (393-431)||(10509115-10509153)
chr6 (393-430)||(5422841-5422878)
chr6 (393-438)||(18491122-18491167)
chr6 (393-438)||(30912497-30912542)
chr6 (394-438)||(17250057-17250101)
[»] chr5 (6 HSPs)
chr5 (393-438)||(22645804-22645849)
chr5 (394-438)||(20923718-20923762)
chr5 (394-438)||(43234868-43234912)
chr5 (395-438)||(23172517-23172560)
chr5 (393-427)||(18051626-18051660)
chr5 (398-438)||(24106645-24106685)
[»] chr4 (5 HSPs)
chr4 (393-438)||(5362048-5362093)
chr4 (393-438)||(8889227-8889272)
chr4 (395-427)||(7044728-7044760)
chr4 (394-438)||(8011301-8011345)
chr4 (394-438)||(9149820-9149864)
[»] chr7 (14 HSPs)
chr7 (394-438)||(5715290-5715334)
chr7 (394-438)||(44944934-44944978)
chr7 (395-438)||(5058530-5058573)
chr7 (393-427)||(7730438-7730472)
chr7 (394-431)||(22687756-22687793)
chr7 (394-438)||(21846510-21846554)
chr7 (393-427)||(24725573-24725607)
chr7 (393-427)||(39182259-39182293)
chr7 (393-430)||(8330138-8330175)
chr7 (393-438)||(26281394-26281439)
chr7 (393-438)||(26565713-26565758)
chr7 (394-438)||(4247356-4247400)
chr7 (394-438)||(11326386-11326430)
chr7 (394-438)||(30294175-30294219)
[»] chr3 (10 HSPs)
chr3 (395-438)||(3449376-3449419)
chr3 (391-438)||(27676353-27676400)
chr3 (393-438)||(29067283-29067328)
chr3 (388-438)||(15806591-15806640)
chr3 (393-438)||(28745769-28745814)
chr3 (393-437)||(8156217-8156261)
chr3 (394-438)||(20756039-20756083)
chr3 (394-430)||(22137278-22137314)
chr3 (393-437)||(22356139-22356183)
chr3 (398-438)||(42696870-42696910)
[»] scaffold0042 (1 HSPs)
scaffold0042 (393-438)||(93789-93834)
[»] chr2 (4 HSPs)
chr2 (393-438)||(15266081-15266126)
chr2 (393-427)||(31238073-31238107)
chr2 (393-438)||(1404782-1404827)
chr2 (393-437)||(19245152-19245196)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 18305334 - 18304896
Alignment:
Q  1 agaagacacagtcacaatgattttgttaacatttaaaataacttaaaaggctcaggaaatacacttaatttcagataattatatttaaggatttcatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18305334 agaagacacagtcacaatgattttgttaacatttaaaataactcaaaaggctcaggacatacacttaatttcagataattatatttaaggatttcatctt 18305235  T
Q  101 gtagctaatcaccccaaaaa-cagttgagttctaggcttctagctaatacacgctaaactttgatcatacgaaagcaatttaattgttaaaatatatctg 199  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  18305234 gaagctaatcaccccaaaaaacagttgagttctaggcttctagctaatacacgctaaactttgatcatacgaaagcaatccaattgttaaaatatatctg 18305135  T
Q  200 tcatacatatgttacaatcatttgatgtaagaggtttttgaatcccatacacacagaaaagtagagtgggttgtgtaaaagtctatggtgcataggtacg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  18305134 tcatacatatgttacaatcatttgatgtaagaggtttttgaatcccatacacacagaaaagtagagtggattgtgtaaaagtctatggtgcataggtatg 18305035  T
Q  300 ggtacaagtaatacgataaatttttccatcgcatgtacgtttttgctatattcactatggcgaatcaactaagtaaaaataggtacgtatgagcattgtt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  18305034 ggtacaagtaatacgataaatttttccatcgcatgtacgtttttgctacattcgctatggcgaatcaactaagtaaaaataggtacgtacgagcattgtt 18304935  T
Q  400 gtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||  |||||||||||||||| ||||||||||    
T  18304934 gtcaaaatcccaacttaaatcctaaaatccagtattttg 18304896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 25146898 - 25146853
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  25146898 cattgttgtcaaaatcctgacttaaatcctaaaattcagaattttg 25146853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 19010073 - 19010031
Alignment:
Q  396 tgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  19010073 tgttgtcaaaatccggacttaaatcctaaaattcaggattttg 19010031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 16125580 - 16125543
Alignment:
Q  401 tcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  16125580 tcaaaatcctgacttaaatcctaaaattcaggattttg 16125543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 30619075 - 30619119
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||    
T  30619075 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttg 30619119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Complemental strand, 9327345 - 9327310
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaatt 428  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9327345 cattgttgttaaaatcctgacttaaatcctaaaatt 9327310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 427
Target Start/End: Complemental strand, 9352193 - 9352159
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaat 427  Q
    ||||||||||||||||| |||||||||||||||||    
T  9352193 cattgttgtcaaaatcccgacttaaatcctaaaat 9352159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 9955165 - 9955120
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||||  ||||||||||||||||| || ||||||    
T  9955165 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttg 9955120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 17056129 - 17056084
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||| ||||||||||||| |||||||||||||| ||| ||||||    
T  17056129 cattgtagtcaaaatcctgatttaaatcctaaaatccaggattttg 17056084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 21846398 - 21846353
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| || |||||||||||||| ||| ||||||    
T  21846398 cattgttgtcaaaatcccgagttaaatcctaaaatccaggattttg 21846353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 47785791 - 47785836
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||    
T  47785791 cattgttgtcaaaatcccaacataaatcctaaaattcaggattttg 47785836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 23528656 - 23528700
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||  ||||||||| |||||||||| ||||||    
T  23528656 attgttgtcaaaatcccaacttaaatcttaaaattcaggattttg 23528700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 477177 - 477132
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  477177 cattgttgtcaaaatcctgacttaaatcctaaaatccaggattttg 477132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 11879599 - 11879644
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  11879599 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttg 11879644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 11897015 - 11897060
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  11897015 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttg 11897060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 31424158 - 31424206
Alignment:
Q  389 tgagcattgttgtcaaaatcctgacttaaatcctaaaattcagtatttt 437  Q
    |||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  31424158 tgagcattattgtcaaaatcctgacttaaattctaaaattcaggatttt 31424206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 9036801 - 9036758
Alignment:
Q  395 ttgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  9036801 ttgttgtcaaaaacctgacttaaatcctaaaattcaggattttg 9036758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 5922048 - 5922093
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  5922048 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttg 5922093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 23136348 - 23136393
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||    
T  23136348 cattattgtcaaaatcccgacttaaatcctaaaattcaggattttg 23136393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 15294672 - 15294714
Alignment:
Q  396 tgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttg 15294714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 15475041 - 15475083
Alignment:
Q  396 tgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttg 15475083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 24056698 - 24056653
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||| |||||||| |||||||||||||||||| ||| ||||||    
T  24056698 cattgttatcaaaatcttgacttaaatcctaaaatccaggattttg 24056653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 17646993 - 17647037
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||| | |||||||||| |||||||||| ||||||    
T  17646993 attgttgtcaaaattccgacttaaatcataaaattcaggattttg 17647037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 6943590 - 6943545
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  6943590 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttg 6943545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 15528239 - 15528195
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  15528239 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttg 15528195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 7223517 - 7223563
Alignment:
Q  392 gcattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||    
T  7223517 gcattgttgtcaaaatcccgacttaaatcctaaaatttaggattttg 7223563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 17103201 - 17103246
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||    
T  17103201 cattgttgtcaaaatcccgacttaaatcttaaaattcaggattttg 17103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 17543870 - 17543825
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  17543870 cattgttgtcaaaatctcgacttaaatcctaaaattcaggattttg 17543825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 7918510 - 7918466
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  7918510 attgttgtcaaaatcccgacttaaattctaaaattcaggattttg 7918466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 12245106 - 12245153
Alignment:
Q  391 agcattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||| |||||| ||| ||||||| |||||||||||||||||    
T  12245106 agcattgttgttaaaatcatgatttaaatcttaaaattcagtattttg 12245153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 431
Target Start/End: Complemental strand, 10509153 - 10509115
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcag 431  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  10509153 cattattgtcaaaatccagacttaaatcctaaaattcag 10509115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 5422878 - 5422841
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattca 430  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  5422878 cattgttgtcaaaatcccgacttaaatactaaaattca 5422841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 18491167 - 18491122
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||| ||||||||||| ||||||||||||||||| ||| ||||||    
T  18491167 cattgctgtcaaaatcccgacttaaatcctaaaatccagaattttg 18491122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 30912542 - 30912497
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||||  ||||||||||||||||| || ||||||    
T  30912542 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttg 30912497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 17250057 - 17250101
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||| ||||||| ||||||||||||||||| ||| ||||||    
T  17250057 attgttgttaaaatcccgacttaaatcctaaaatccaggattttg 17250101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 22645849 - 22645804
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  22645849 cattgttgtcaaaatcccgacttaaatcctaaaatccagtattttg 22645804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 20923718 - 20923762
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||    
T  20923718 attgttgtcaaaatcccgacttaaatcctaaaatccagaattttg 20923762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 43234868 - 43234912
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  43234868 attgttgtcaaaatcccaacttaaatcctaaaattcaggattttg 43234912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 23172560 - 23172517
Alignment:
Q  395 ttgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| |||||||||||||||||| || ||||||    
T  23172560 ttgttgtcaaaatcccgacttaaatcctaaaatttaggattttg 23172517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 427
Target Start/End: Complemental strand, 18051660 - 18051626
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaat 427  Q
    ||||||||||||||||| |||||||||||||||||    
T  18051660 cattgttgtcaaaatcccgacttaaatcctaaaat 18051626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 24106645 - 24106685
Alignment:
Q  398 ttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| ||||||| |||||||||| ||||||    
T  24106645 ttgtcaaaatcctgatttaaatcataaaattcaggattttg 24106685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 5362093 - 5362048
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  5362093 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttg 5362048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 8889227 - 8889272
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||| ||||||||||| ||||||||||||||||| ||| ||||||    
T  8889227 cattgatgtcaaaatcccgacttaaatcctaaaatccaggattttg 8889272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 7044728 - 7044760
Alignment:
Q  395 ttgttgtcaaaatcctgacttaaatcctaaaat 427  Q
    ||||||||||||||| |||||||||||||||||    
T  7044728 ttgttgtcaaaatcccgacttaaatcctaaaat 7044760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 8011345 - 8011301
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||  ||| |||||||||||||||| ||||||    
T  8011345 attgttgtcaaaatcccaactcaaatcctaaaattcaggattttg 8011301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 9149864 - 9149820
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||| |||||||||| |||||||||||||||||| || ||||||    
T  9149864 attgtggtcaaaatcccgacttaaatcctaaaatttaggattttg 9149820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 5715290 - 5715334
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  5715290 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttg 5715334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 44944978 - 44944934
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  44944978 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttg 44944934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 5058530 - 5058573
Alignment:
Q  395 ttgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  5058530 ttgttgtcaaaatcccgacttaaatcctaaaattcagaattttg 5058573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 427
Target Start/End: Complemental strand, 7730472 - 7730438
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaat 427  Q
    |||||||||||||||||||||||||||||||||||    
T  7730472 cattgttgtcaaaatcctgacttaaatcctaaaat 7730438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 22687793 - 22687756
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcag 431  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22687793 attgttgtcaaaatcccgacttaaatcctaaaattcag 22687756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 21846554 - 21846510
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  21846554 attgttgtcaaaatcccgacttaaattctaaaattcaggattttg 21846510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 427
Target Start/End: Complemental strand, 24725607 - 24725573
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaat 427  Q
    ||||||||||||||||| |||||||||||||||||    
T  24725607 cattgttgtcaaaatccagacttaaatcctaaaat 24725573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 427
Target Start/End: Original strand, 39182259 - 39182293
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaat 427  Q
    |||||||| ||||||||||||||||||||||||||    
T  39182259 cattgttgacaaaatcctgacttaaatcctaaaat 39182293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 8330175 - 8330138
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattca 430  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  8330175 cattgttgtcaaaatcctgacctaaattctaaaattca 8330138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 26281439 - 26281394
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| | |||||||||| |||||||||| ||||||    
T  26281439 cattgttgtcaaaattccgacttaaatcataaaattcaggattttg 26281394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 26565758 - 26565713
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| ||| |||||||| |||||||||| ||||||    
T  26565758 cattgttgtcaaaattctgccttaaatcataaaattcagaattttg 26565713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 4247356 - 4247400
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||  | |||||||||||||||||| ||||||    
T  4247356 attgttgtcaaaatcccaatttaaatcctaaaattcaggattttg 4247400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 11326386 - 11326430
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||  ||||||||||||||||| || ||||||    
T  11326386 attgttgtcaaaatcccaacttaaatcctaaaatttaggattttg 11326430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 30294175 - 30294219
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||  |||||||||||||||| ||| ||||||    
T  30294175 attgttgtcaaaatcccaacttaaatcctaaaatccaggattttg 30294219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 3449419 - 3449376
Alignment:
Q  395 ttgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  3449419 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttg 3449376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 27676353 - 27676400
Alignment:
Q  391 agcattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  27676353 agcattgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttg 27676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 29067283 - 29067328
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  29067283 cattgttgtcaaaatcccgacttaaattctaaaattcaggattttg 29067328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 15806640 - 15806591
Alignment:
Q  388 atgagcattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||| ||||||    
T  15806640 atgagcattgttgtcaaaatcc-gacttaaatcctacaatccagaattttg 15806591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 28745769 - 28745814
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| || ||||||||||||||| || ||||||    
T  28745769 cattgttgtcaaaatcccgatttaaatcctaaaatttaggattttg 28745814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 8156261 - 8156217
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtatttt 437  Q
    |||||||||||||||||  |||||||| ||||||||||| |||||    
T  8156261 cattgttgtcaaaatcccaacttaaattctaaaattcagaatttt 8156217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 20756039 - 20756083
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| |||||||||  |||||||||| ||||||    
T  20756039 attgttgtcaaaatcccgacttaaattataaaattcaggattttg 20756083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 22137278 - 22137314
Alignment:
Q  394 attgttgtcaaaatcctgacttaaatcctaaaattca 430  Q
    |||||| | ||||||||||||||||||||||||||||    
T  22137278 attgtttttaaaatcctgacttaaatcctaaaattca 22137314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 22356183 - 22356139
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtatttt 437  Q
    ||||||| ||||||| | ||||||||||||||||||||| |||||    
T  22356183 cattgttatcaaaattccgacttaaatcctaaaattcaggatttt 22356139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 42696870 - 42696910
Alignment:
Q  398 ttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||| |||||||||| |||||||||| ||||||    
T  42696870 ttgtcaaaatcccgacttaaatcataaaattcaggattttg 42696910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 93834 - 93789
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  93834 cattgttgtcaaaatcccgacttaaatcctaaaatccagaattttg 93789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 15266081 - 15266126
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||    
T  15266081 cattgttgtcaaaatcatgatttaaatcctaaaattcaggattttg 15266126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 427
Target Start/End: Complemental strand, 31238107 - 31238073
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaat 427  Q
    ||||||||||||||||| |||||||||||||||||    
T  31238107 cattgttgtcaaaatcccgacttaaatcctaaaat 31238073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 1404782 - 1404827
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtattttg 438  Q
    ||||||||||||||||| ||||||||| |||||||| || ||||||    
T  1404782 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttg 1404827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 19245152 - 19245196
Alignment:
Q  393 cattgttgtcaaaatcctgacttaaatcctaaaattcagtatttt 437  Q
    ||||||||||||||||| |||||||||  |||||||||| |||||    
T  19245152 cattgttgtcaaaatcccgacttaaattttaaaattcaggatttt 19245196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University