View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9238_high_5 (Length: 427)
Name: NF9238_high_5
Description: NF9238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9238_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 83 - 407
Target Start/End: Complemental strand, 29557946 - 29557619
Alignment:
| Q |
83 |
gcgatttctcataactcaccaccaaatcatttccaataatggaaagattctctgcataataatgggaaataaataaaagtcagaaaatgtgaactgggtt |
182 |
Q |
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| T |
29557946 |
gcgatttctcataactcaccaccaaatcatttccaataatggaaagattctctgcataataatgggaaataaataaaagtcagaaaatgtgaactgggtt |
29557847 |
T |
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| Q |
183 |
tggtttaaaacttttgcttacgtgcaaatccagccaagatggacccatatgcttgctgagctactgtctttgtctaccacactacactaccaatgcaatg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
29557846 |
tggtttaaaacttttgcttacgtgcaaatccagccaagatggacccatatgcttgctaagctactgtctttgtctaccacactacactaccaatgcattg |
29557747 |
T |
|
| Q |
283 |
tttatcatttttgcaaatactatttttaatttcttatatcaaatgattgaaaataatgacaaagaaaaagtccc-ttttttctaactttgta--tttttt |
379 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
29557746 |
tttatctgttttgcaaatactatttttaatttcttatatcaaatgattgaaaataatgacaaagaaaaagtcccattttttctaactttgtatttttttt |
29557647 |
T |
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| Q |
380 |
attaaggttacgttaacttgtgtcctaa |
407 |
Q |
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|||| ||||| |||| |||||| ||||| |
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| T |
29557646 |
attagggttatgttatcttgtgccctaa |
29557619 |
T |
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