View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9238_low_14 (Length: 303)
Name: NF9238_low_14
Description: NF9238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9238_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 44 - 287
Target Start/End: Complemental strand, 48404849 - 48404606
Alignment:
| Q |
44 |
cttcaatccccctatattagaaataaaatttatattcacacataagttgaggaactgagtttatttttgtgcttagcttttgagttagaggccagggaaa |
143 |
Q |
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| T |
48404849 |
cttcaatccccctatattagaaataaaatttatattcacacataagttgaggaactgagtttatttttgtgcttagcttttgagttagaggccagggaaa |
48404750 |
T |
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| Q |
144 |
ctacactcatgcaaattgaatccaatctgatatggtgggtggcatttcatgtgcccaattttgaacactcttcctgtgtacaatctacacatgctataaa |
243 |
Q |
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| T |
48404749 |
ctacactcatgcaaattgaatccaatctgatatggtgggtggcatttcatgtgcccaattttgaacactcttcctgtgtacaatctacacatgctataaa |
48404650 |
T |
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| Q |
244 |
aaatggaaagataacatcgaatccctcttaaaataggaaaccaa |
287 |
Q |
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| T |
48404649 |
aaatggaaagataacatcgaatccctcttaaaataggaaaccaa |
48404606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 48406077 - 48406015
Alignment:
| Q |
19 |
attttgtgtattattgatcaatttccttcaatccccctatattagaaataaaatttatattcaca |
83 |
Q |
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| T |
48406077 |
attttgtgtattatcgatcaatttccttcaatccccctatattagtaataaa--ttatattcaca |
48406015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 48405023 - 48404994
Alignment:
| Q |
19 |
attttgtgtattattgatcaatttccttca |
48 |
Q |
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| T |
48405023 |
attttgtgtattattgatcaatttccttca |
48404994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 48405114 - 48405061
Alignment:
| Q |
113 |
tgcttagcttttgagttagaggcca----gggaaactacactcatgcaaattga |
162 |
Q |
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| T |
48405114 |
tgcttagctttttagttagaggccagggtgggaaactaccctcatgcaaattga |
48405061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 108 - 287
Target Start/End: Original strand, 42830470 - 42830643
Alignment:
| Q |
108 |
ttttgtgcttagcttttgagttagaggccagggaaactacactcatgcaaattgaatccaatctgatatggtgggtggcatttcatgtgcccaattttga |
207 |
Q |
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| T |
42830470 |
ttttgtgcttagctttttagttagaggccagggaaactacactcatgcaaattgaatccaaactgatatggtgggtggcatttcatgtgcccaattttga |
42830569 |
T |
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| Q |
208 |
acactcttcctgtgtacaatctacacatgctataaaaaatggaaagataacatcgaat--ccctcttaaaataggaaaccaa |
287 |
Q |
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| T |
42830570 |
acac-------gtgtataatctgca-gcgctatgaaaaatggaaagataatatctaattcccctcttaaaataggaaaccaa |
42830643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 42829246 - 42829291
Alignment:
| Q |
31 |
attgatcaatttccttcaatccccctatattagaaataaaatttat |
76 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| ||||| |
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| T |
42829246 |
attgataaatttccttcaatccccctatattagtaataaattttat |
42829291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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