View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9238_low_2 (Length: 683)

Name: NF9238_low_2
Description: NF9238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9238_low_2
NF9238_low_2
[»] chr7 (1 HSPs)
chr7 (18-665)||(46631542-46632189)
[»] chr1 (1 HSPs)
chr1 (40-139)||(15767278-15767380)


Alignment Details
Target: chr7 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 665
Target Start/End: Original strand, 46631542 - 46632189
Alignment:
Q  18 tgttccttgtaatgaaatcgtatctactccatctagagttagaaaagcagaaaaaattcacatcaaataaccaaagtaatcattcgagacattgaggaga 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46631542 tgttccttgtaatgaaatcgcatctactccatctagagttagaaaagcagaaaaaattcacatcaaataaccaaagtaatcattcgagacattgaggaga 46631641  T
Q  118 taataatttccatccattcttattttatcattatatatatgtcatgtttggataaaaaacttaaagttcaaactcaatgaattagctatgaaggttggta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  46631642 taataatttccatccattcttattttatcattatatatatgtcatgtttggataaacaacttaaagttcaaactcaatgaattagcaatgaaggttggta 46631741  T
Q  218 aaaatttgaatcattatattgagaaaaagggcaacaaagagaaatataagctgaatatgtctcatgtgtattctttgataaaaatgtatattacaattat 317  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46631742 aaaattggaataattatattgagaaaaagggcaacaaagagaaatataagttgaatatgtctcatgtgtattctttgataaaaatgtatattacaattat 46631841  T
Q  318 atggaaaggtgaccccaatgtttatatactgagaatccaaactgactttcctaaatgtaagaaggagactaacaaactatctaacaaaatgataaagcca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  46631842 atggaaaggtgaccccaatgtttatatactgagaatccaaactgactttcctaaatgtaagaaggagactaacaaactatctaacaaaatgacaaaacca 46631941  T
Q  418 aaatactacaactaaacctacaaagtaattatatttattactccccccacaagctggaggatgcacatcgatgagaccaagcttggaaatcaaatggaga 517  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46631942 aaatactacaactaaacctacaaagtaattacatttattactccccccacaagctggaggatgcacatcgatgagaccaagcttggaaatcaaatggaga 46632041  T
Q  518 aatgctggttttgctagaggttttgttagcagatcagtaatctcggcagcagaagaagtaagaaataatttgatgattcctagttccaatttttctctta 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46632042 aatgctggttttgctagaggttttgttagcagatcagtaatctcggcagcagaagaagtaagaaataatttgatgattcctagttccaatttttctctta 46632141  T
Q  618 tgatgtggcaatcgattttgatgtgttttgtcagctcatggaaggtgg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46632142 tgatgtggcaatcgattttgatgtgttttgtcagctcatggaaggtgg 46632189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 15767380 - 15767278
Alignment:
Q  40 tctactccatct-agagttagaaaagca---gaaaaaattcacatcaaataaccaaagtaatcattcgagacattgaggagataataatttccatccatt 135  Q
    |||||||||||| || |||||||||| |   |||||||||||||||||||||||||||| |||||||| |||||||| |||||| |||||||||| ||||    
T  15767380 tctactccatcttagggttagaaaagaaccggaaaaaattcacatcaaataaccaaagt-atcattcgggacattgaagagatactaatttccatacatt 15767282  T
Q  136 ctta 139  Q
    ||||    
T  15767281 ctta 15767278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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