View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9238_low_3 (Length: 564)

Name: NF9238_low_3
Description: NF9238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9238_low_3
NF9238_low_3
[»] chr8 (14 HSPs)
chr8 (9-444)||(43615147-43615583)
chr8 (47-223)||(20242638-20242814)
chr8 (47-223)||(20250346-20250522)
chr8 (457-543)||(43615026-43615112)
chr8 (160-222)||(5616841-5616903)
chr8 (52-218)||(16578811-16578977)
chr8 (54-131)||(33199412-33199490)
chr8 (47-97)||(20241062-20241112)
chr8 (47-97)||(20251955-20252005)
chr8 (170-221)||(2250559-2250610)
chr8 (170-217)||(2257600-2257647)
chr8 (169-222)||(20093443-20093497)
chr8 (158-218)||(2098526-2098586)
chr8 (115-203)||(24726606-24726694)
[»] chr4 (9 HSPs)
chr4 (47-222)||(16871563-16871738)
chr4 (50-218)||(54148191-54148358)
chr4 (47-127)||(16869513-16869593)
chr4 (120-218)||(24131726-24131825)
chr4 (158-218)||(24225968-24226028)
chr4 (51-134)||(16543360-16543443)
chr4 (47-96)||(37945522-37945571)
chr4 (178-216)||(7258651-7258689)
chr4 (50-96)||(54146652-54146697)
[»] chr2 (8 HSPs)
chr2 (47-222)||(8986839-8987014)
chr2 (47-219)||(32291069-32291242)
chr2 (47-222)||(38583515-38583689)
chr2 (61-218)||(29409109-29409266)
chr2 (47-134)||(8985574-8985661)
chr2 (122-214)||(42631686-42631777)
chr2 (50-204)||(1172792-1172944)
chr2 (62-119)||(32276954-32277011)
[»] chr7 (16 HSPs)
chr7 (47-222)||(46963088-46963263)
chr7 (47-223)||(44338961-44339137)
chr7 (47-222)||(15614274-15614449)
chr7 (76-222)||(48643533-48643679)
chr7 (50-222)||(21814339-21814510)
chr7 (50-134)||(2628270-2628354)
chr7 (47-134)||(46964442-46964529)
chr7 (158-218)||(17921334-17921394)
chr7 (181-222)||(26403414-26403455)
chr7 (47-97)||(44337384-44337434)
chr7 (58-134)||(6841471-6841547)
chr7 (47-108)||(6840630-6840691)
chr7 (52-96)||(26402360-26402404)
chr7 (121-200)||(11828004-11828083)
chr7 (47-88)||(26403493-26403534)
chr7 (158-222)||(3902154-3902217)
[»] chr1 (11 HSPs)
chr1 (47-201)||(15629371-15629525)
chr1 (55-218)||(2071561-2071725)
chr1 (63-218)||(2075099-2075255)
chr1 (158-221)||(9167912-9167975)
chr1 (47-134)||(6696015-6696102)
chr1 (121-218)||(3774414-3774511)
chr1 (158-218)||(11993544-11993603)
chr1 (47-134)||(15630170-15630257)
chr1 (174-222)||(11749751-11749799)
chr1 (50-96)||(28665018-28665063)
chr1 (184-222)||(10354272-10354312)
[»] chr3 (12 HSPs)
chr3 (47-222)||(42531202-42531376)
chr3 (55-221)||(814419-814585)
chr3 (47-214)||(50297380-50297547)
chr3 (47-211)||(46691473-46691636)
chr3 (47-222)||(814172-814346)
chr3 (50-222)||(16462879-16463050)
chr3 (160-222)||(22820996-22821058)
chr3 (47-134)||(42530590-42530676)
chr3 (47-138)||(50294654-50294743)
chr3 (47-108)||(30057111-30057172)
chr3 (50-134)||(18088161-18088244)
chr3 (162-222)||(2593232-2593288)
[»] chr5 (9 HSPs)
chr5 (47-222)||(24137509-24137685)
chr5 (158-222)||(9512370-9512434)
chr5 (160-222)||(40784070-40784132)
chr5 (158-221)||(27315165-27315228)
chr5 (47-96)||(11320499-11320547)
chr5 (175-222)||(18050907-18050954)
chr5 (79-133)||(17749699-17749753)
chr5 (47-96)||(11343949-11343997)
chr5 (51-95)||(6643402-6643446)
[»] chr6 (13 HSPs)
chr6 (50-204)||(10741702-10741855)
chr6 (47-218)||(18984414-18984584)
chr6 (51-222)||(33424005-33424179)
chr6 (47-222)||(9290678-9290839)
chr6 (125-222)||(21862477-21862574)
chr6 (47-106)||(22868489-22868548)
chr6 (50-134)||(21862689-21862773)
chr6 (163-222)||(28063138-28063198)
chr6 (161-216)||(8701721-8701776)
chr6 (163-216)||(5986884-5986937)
chr6 (47-134)||(18792867-18792954)
chr6 (160-203)||(2131686-2131729)
chr6 (158-214)||(9365236-9365292)
[»] scaffold0007 (1 HSPs)
scaffold0007 (76-218)||(14306-14448)
[»] scaffold0511 (1 HSPs)
scaffold0511 (47-134)||(11187-11274)
[»] scaffold0002 (1 HSPs)
scaffold0002 (47-134)||(406269-406356)
[»] scaffold0048 (1 HSPs)
scaffold0048 (174-218)||(61983-62027)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 43615583 - 43615147
Alignment:
Q  9 gagaagcagagataagatatgtgatcaagttgtacctaataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataact 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43615583 gagaagcaaagataagatatgtgatcaagttgtacctaataagaaaatatataataaaatctaatggactctaacttactaatataaaagctcaataact 43615484  T
Q  109 aaaactcaatattttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaa 208  Q
    |||  ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615483 aaagttcaatattttattatctaacatatatcttcaaactcacaatgaatcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaa 43615384  T
Q  209 ataatataaagt-----------tcatgttgaaagttggatatgctccaagtacatgcacaccttttatatgtttgacattgaaagatttgtatagagga 297  Q
    ||||||||||||           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615383 ataatataaagttcaaacaatggtcatgttcaaagttggatatgctccaagtacatgcacaccttttatatgtttgacattgaaagatttgtatagagga 43615284  T
Q  298 tcaagttttgctttgaagttgcgatttaccaatatagttttatgtttttgttttgttgttgattacgggcttaagattcttatcaagtcttattcaaatt 397  Q
    ||||||||||||||||||||| |||||||||          |||||||||||||||||||||||| |||||||||||||||||||||  |||| ||||||    
T  43615283 tcaagttttgctttgaagttgtgatttacca----------atgtttttgttttgttgttgattatgggcttaagattcttatcaagaattatccaaatt 43615194  T
Q  398 tcttgtctaaaataattcatttaatatcaacatagtagtatatatat 444  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  43615193 ttttgtctaaaataattcatttaatatcaacatagtagtatatatat 43615147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 20242814 - 20242638
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||| ||||||||||||||||| |||   ||| ||||||||||||||||| |  |||||||| |||  |||||||||||||| |||||| || | | |||    
T  20242814 ataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaacatctaccctcaaa 20242715  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttca 223  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20242714 ctcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaatacgaaaaatatactaagtaatataaagttca 20242638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 20250346 - 20250522
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||| ||||||||||||||||| |||   ||| ||||||||||||||||| |  |||||||| |||  |||||||||||||| |||||| || | | |||    
T  20250346 ataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaacatctaccctcaaa 20250445  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttca 223  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20250446 ctcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaatacgaaaaatatactaagtaatataaagttca 20250522  T

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Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 457 - 543
Target Start/End: Complemental strand, 43615112 - 43615026
Alignment:
Q  457 gaaggaaaaataacatacagcaccaggcaggcggggccaaggaccaaagtcaaatgcataacgagctgcctttacagcaacatcaat 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615112 gaaggaaaaataacatacagcaccaggcaggcggggccaaggaccaaagtcaaatgcataacgagctgcctttacagcaacatcaat 43615026  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 5616903 - 5616841
Alignment:
Q  160 aacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  5616903 aacaagaagcattgtgagtttgtcaaacaaaatatgaaaaagatattaaataatataaagttc 5616841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 16578811 - 16578977
Alignment:
Q  52 agaatatataataaaatctaatgaact-ctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactca 150  Q
    |||||||||| |||||||||||| ||| |||||||| ||||||||| | |||||   | ||  | |||| |||||||||||||| ||| ||| ||| |||    
T  16578811 agaatatata-taaaatctaatggactgctaacttagtaatataaaggttcaatggttgaagattaatactttattatctaacacataccttcaaattca 16578909  T
Q  151 caataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
       |   | |||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||    
T  16578910 tgttgcattaacaagaaacattatgagtttgtcaaacaaattacgaaaaacatcctaaataatataaa 16578977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 33199490 - 33199412
Alignment:
Q  54 aatatataataaaatctaatga-actctaacttactaatataaaagctcaataactaaaactcaatattttattatcta 131  Q
    |||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||| ||  |||||| |||||||||||    
T  33199490 aatatataataaaacctaattatactctgacttactaatataaaagctcaataacttaagatcaatactttattatcta 33199412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 20241112 - 20241062
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaa 97  Q
    |||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  20241112 ataagagaatatataataaaatctaacggactctaacttactactataaaa 20241062  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 20251955 - 20252005
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaa 97  Q
    |||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  20251955 ataagagaatatataataaaatctaacggactctaacttactactataaaa 20252005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 2250610 - 2250559
Alignment:
Q  170 attgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagtt 221  Q
    ||||| ||||| || ||||||||||||| |||||||||||||||||||||||    
T  2250610 attgtaagtttatctaacaaaatacgaacaacatactaaataatataaagtt 2250559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 2257600 - 2257647
Alignment:
Q  170 attgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataa 217  Q
    ||||| ||||| || ||||||||||||| |||||||||||||||||||    
T  2257600 attgtaagtttatctaacaaaatacgaacaacatactaaataatataa 2257647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 20093443 - 20093497
Alignment:
Q  169 cattgtgagtttgtcaaacaaaatacgaaaaac-atactaaataatataaagttc 222  Q
    |||||| | ||||||||| |||||||||||||  |||||||||||||||||||||    
T  20093443 cattgtaaatttgtcaaataaaatacgaaaaaatatactaaataatataaagttc 20093497  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 2098526 - 2098586
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    ||||||||||  ||||||||||||||||||||||||  |||||  |  |||||||||||||    
T  2098526 tcaacaagaaatattgtgagtttgtcaaacaaaatataaaaaatgtgttaaataatataaa 2098586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 24726694 - 24726606
Alignment:
Q  115 caatattttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacat 203  Q
    |||||||||| |||||||||  || ||| |||||||  ||   ||||||| ||  ||||||| ||||||||||||||||| ||||||||    
T  24726694 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaaaaaatattgtgaatttgtcaaacaaaatacaaaaaacat 24726606  T

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Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 16871738 - 16871563
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||| || |||||||| || |  |||| ||||||||||||||| || | | |||    
T  16871738 ataagataatatataataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaacatctaccctcaaa 16871639  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16871638 ctcacaatgagtcaacaagaaacattctgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 16871563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 54148358 - 54148191
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactc 149  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||  |||| || || ||||||  ||| |||||||||| |||   | ||||||    
T  54148358 agagaatatataataaa-tctattggactctaacttactaatataaaagcctaatagcttaagctcaatgctttgttatctaacacatactctcaaactc 54148260  T
Q  150 acaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    |  ||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54148259 atgatgcatcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatagtaaataatataaa 54148191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 16869593 - 16869513
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttatta 127  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||    
T  16869593 ataagagagtatataataaaatctaatgaactctaacttactaatataaaagcccaataacttaagctcaatactttatta 16869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 24131825 - 24131726
Alignment:
Q  120 ttttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacga-aaaacatactaaataatataaa 218  Q
    |||||||||||||||| || | | ||||||||||| | |||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||||    
T  24131825 ttttattatctaacatctaccctcaaactcacaatgaatcaacaagaagcattgtgagtttgttcaacaaaatacgaaaaaacatacaaaataatataaa 24131726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 24226028 - 24225968
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  24226028 tcaacaagaatcattgtgggtttgtcaaacaaaatacgaaaaatatactaaataatataaa 24225968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 16543443 - 16543360
Alignment:
Q  51 gagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||  |||||||| ||   || || ||||||||||||||    
T  16543443 gagaatatataataaaacttaatgaactctaacttactaatataaaaggccaataacttaagtccattactttattatctaaca 16543360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 37945571 - 37945522
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaa 96  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  37945571 ataagagaatatataataaaatttaatggactctaacttactaatataaa 37945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 7258651 - 7258689
Alignment:
Q  178 tttgtcaaacaaaatacgaaaaacatactaaataatata 216  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  7258651 tttgtcaaataaaatacgaaaaacatactaaataatata 7258689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 54146697 - 54146652
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaa 96  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  54146697 agagaatatatgataaa-tctaatggactctaacttactaatataaa 54146652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 8987014 - 8986839
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||| || |  |||| ||||||||||||||| || | | |||    
T  8987014 ataagagaatatataataaaatttaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaacatctaccctcaaa 8986915  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8986914 ctcacaatgagtcaacaagaagcattctgagtttgtcatacaaaatacgaaaaacatactaaataatataaagttc 8986839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 32291242 - 32291069
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||  | |||||||| || ||||||| ||||||||||||||| || | | |||    
T  32291242 ataagagaatatataataaatcttaatggactctaacttactaatataaagacacaataacttaagctcaatactttattatctaacatttaccctcaaa 32291143  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacga-aaaacatactaaataatataaag 219  Q
    || ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  32291142 cttacaatgagtcaacaagaagcattgttagtttgtcaaacaaaatacgaaaaaacatactaaataatataaag 32291069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 38583515 - 38583689
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||| |||||||||||||||||||| |   ||||||||||||||||||| || |||||| | || |  |||||||||||||||||||| || ||| |||    
T  38583515 ataagcgaatatataataaaatctaacgggttctaacttactaatataaaggcccaataatttaagcctaatattttattatctaacatctaccttcaaa 38583614  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||| ||||||||||||||||||||  |||| ||| |||||||| ||||||||||||| |||||||||||||    
T  38583615 ctcacaatgagtcaacaagaagcattgtggatttgccaatcaaaatac-aaaaacatactaagtaatataaagttc 38583689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 29409109 - 29409266
Alignment:
Q  61 aataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactcacaataagtca 160  Q
    |||||||| ||||| ||||||||||||||| ||||| |||||||| || || | ||||| ||||||||||||||  || | | |||||||  ||   |||    
T  29409109 aataaaatttaatggactctaacttactaaaataaatgctcaatagcttaagcacaatactttattatctaacacctaccctcaaactcatgatgcatca 29409208  T
Q  161 acaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    ||| |||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  29409209 acacgaagcactgtgagcttgtcaaacaaaatatgaaaaacatactaaacaatataaa 29409266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 8985661 - 8985574
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||| |  |||||||| || |  |||| ||||||||||||||    
T  8985661 ataagagaatatataataaaatctaatggactttaacttactaatataaatgtccaataacttaagcctaatactttattatctaaca 8985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 42631686 - 42631777
Alignment:
Q  122 ttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataata 214  Q
    |||||||||||||  |||||| |||||||  ||   |||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||    
T  42631686 ttattatctaacacttatctttaaactcatgattgatcaacaagaaacattgtgagtttgtcaaacaaaataag-aaagcatactaaataata 42631777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 1172792 - 1172944
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactc 149  Q
    ||||||||||||||||| || |||| ||||||| ||| |||||| || ||  ||||  | ||   ||||| |||||||||||||| ||| ||| ||| ||    
T  1172792 agagaatatataataaa-tcgaatggactctaatttattaatattaaggcctaatagtttaagtacaatactttattatctaacacataccttcaaattc 1172890  T
Q  150 acaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacata 204  Q
    |  ||   ||||||| || ||||||||||||||||||||||||||| ||||||||    
T  1172891 atgatgcatcaacaaaaa-cattgtgagtttgtcaaacaaaatacggaaaacata 1172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 32277011 - 32276954
Alignment:
Q  62 ataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaata 119  Q
    |||||| |||||| ||||||||||||||||||||| |  |||||||| || |||||||    
T  32277011 ataaaacctaatggactctaacttactaatataaaggtccaataacttaagctcaata 32276954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 6e-54; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 46963088 - 46963263
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||| || |  |||| ||||||||||||||| || | | |||    
T  46963088 ataagagaatatctaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaacatctaccctcaaa 46963187  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  46963188 ctcacaatgagtcaacaagaagcattctgagtttgtcagacaatatacgaaaaacatactaaataatataaagttc 46963263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 44339137 - 44338961
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||| ||||||||||||||||| |||   ||| ||||||||||||||||| |  |||||||| |||  |||||||||||||| |||||| || | | |||    
T  44339137 ataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaacatctaccctcaaa 44339038  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttca 223  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  44339037 ctcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaatacgaaaaatatactaagtaatataaagttca 44338961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 15614274 - 15614449
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||| |||||||||||||||| |||||| |||||||||| |||||||||| |  |||||||| || | ||||| ||||||||||||||| || | | |||    
T  15614274 ataaaagaatatataataaaacctaatggactctaacttgctaatataaaggtccaataacttaagcccaatactttattatctaacatctaccctcaaa 15614373  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacg-aaaaacatactaaataatataaagttc 222  Q
    |||| ||| ||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  15614374 ctcaaaatgagtcaacaagaa-tattgtgagtttgtcaaacaaaatatgaaaaaacatactaaataatataaagttc 15614449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 48643679 - 48643533
Alignment:
Q  76 actctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtg 175  Q
    |||||||||| |||||||||| || ||| |||| ||||  |||||||||| ||||||||| || | | ||||||||||| ||||||||| || |||||||    
T  48643679 actctaacttgctaatataaaggcccaaaaacttaaacctaatattttatcatctaacatctaccctcaaactcacaatgagtcaacaataaacattgtg 48643580  T
Q  176 agtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  48643579 agtttgtcaaataaaatacgaaaaacatactaaataatataaagttc 48643533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 21814510 - 21814339
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactc 149  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||| ||| |||| || || ||||||| |||||||||||||   || | | ||||||    
T  21814510 agagaatatataataaac-ctaatggactctaacttactaatataaaggcttaatatcttaagctcaatactttattatctaacgcctaccctcaaactc 21814412  T
Q  150 acaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |  ||    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  21814411 atgatgcaacaacaagaagcattgtgagtttgtcaaacagaatatgaaaaacatactaaataatataaagttc 21814339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 2628270 - 2628354
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||  |||||||||| || ||||||| ||||||||||||||    
T  2628270 agagaatatataataaaacctaatggactctaacttactaatataaagactcaataacttaagctcaatactttattatctaaca 2628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 46964442 - 46964529
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| || |||||||| || |  |||  ||||||||||||||    
T  46964442 ataagagaatatataataaaatctaatggactctaacgtactaatataaatgcccaataacttaagcctaatcctttattatctaaca 46964529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 17921334 - 17921394
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    ||||| |||| || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  17921334 tcaaccagaaacaatgtgagtttgtcaaacaaaatacgaaaaacatactaaataatttaaa 17921394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 26403455 - 26403414
Alignment:
Q  181 gtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26403455 gtcaaacaaaatacgaaaaacatactaaataatataaagttc 26403414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 44337434 - 44337384
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaa 97  Q
    |||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  44337434 ataagagaatatataataaaatctaacggactctaacttactactataaaa 44337384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 6841471 - 6841547
Alignment:
Q  58 tataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    ||||||||||||||| | ||||||||||||| ||||||| || |||||||| ||   | ||||||||||||||||||    
T  6841471 tataataaaatctaacggactctaacttactgatataaaggcccaataacttaagtccgatattttattatctaaca 6841547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 6840630 - 6840691
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataact 108  Q
    |||| |||||||||||||||| |||| | ||||||||||||| ||||||| || ||||||||    
T  6840630 ataaaagaatatataataaaacctaacggactctaacttactgatataaaggcccaataact 6840691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 26402404 - 26402360
Alignment:
Q  52 agaatatataataaaatctaatgaactctaacttactaatataaa 96  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||    
T  26402404 agaatatataataaaatttaataaactctaacttgctaatataaa 26402360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 11828004 - 11828083
Alignment:
Q  121 tttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaa 200  Q
    ||||||||||||||  || | |||||||||  ||   ||||||||||||||||||||||||| || |||||||| |||||    
T  11828004 tttattatctaacacctaccctaaaactcatgatgcatcaacaagaagcattgtgagtttgtaaatcaaaatacaaaaaa 11828083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 26403534 - 26403493
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttact 88  Q
    |||||||||||||||||||||||||||   ||||||||||||    
T  26403534 ataagagaatatataataaaatctaatcggctctaacttact 26403493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 3902217 - 3902154
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||  ||||||||||||| ||| ||||||  |||| |||| |||||||||||||||||    
T  3902217 tcaacaagaaatattgtgagtttgtaaaaaaaaata-aaaaatcatattaaataatataaagttc 3902154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 15629371 - 15629525
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| || | |||||||||||||||||||||  | | | |||    
T  15629371 ataagagaatatataataaaatctaatgaactctaacttactaatataaaggtccaataacttaagcccaatattttattatctaacatccaccctcaaa 15629470  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaac 201  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15629471 ctcacaatgagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaac 15629525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 2071561 - 2071725
Alignment:
Q  55 atatataataaaatctaatgaact-ctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactcacaa 153  Q
    ||||||| ||||| |||||| ||| ||||||||||||||| || || ||||| || || | ||||||||||||||||||||  |  | | |||||||  |    
T  2071561 atatatactaaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacacctgccctcaaactcatga 2071660  T
Q  154 taagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    |   | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2071661 tgcattaacaagaagcattctgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 2071725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 2075099 - 2075255
Alignment:
Q  63 taaaatctaatgaact-ctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactcacaataagtcaa 161  Q
    ||||| |||||| ||| ||||||||||||||| || || ||||| || || | ||||||||||||||||||||  |  | | |||||||  ||   | ||    
T  2075099 taaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacacctgccctcaaactcatgatgcattaa 2075198  T
Q  162 caagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2075199 caagaagcattctgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 2075255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 9167912 - 9167975
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagtt 221  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  9167912 tcaacaagaagcattgtgagtttgtcaaataaaatacgaaaaacaaactaaataatataaagtt 9167975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 6696102 - 6696015
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||| || |  |||| ||||||||||||||    
T  6696102 ataagagaatatttaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaaca 6696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 3774414 - 3774511
Alignment:
Q  121 tttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    ||||||||||||||| || | | |||||||  ||   ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  3774414 tttattatctaacatctaccctcaaactcatgattcatcaacaagaagcattgtgagtttgtcaaacaaaataccaaaaacatattaaaaaatataaa 3774511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 11993603 - 11993544
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  11993603 tcaacaagaagcattgtgagtttgtcaaataaaatacg-aaaacatactaaataatataaa 11993544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 15630170 - 15630257
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||||| || |||||| | || ||||||| |||||||| |||||    
T  15630170 ataagagaatatataataaaacctaatagactctaacttactaatataaaggcccaataatttaagctcaatactttattatttaaca 15630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 11749751 - 11749799
Alignment:
Q  174 tgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  11749751 tgagtttgtcaaacaaaatacaataaacatactaaataatataaagttc 11749799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 28665063 - 28665018
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaa 96  Q
    |||||||||||||||||  |||||| |||||||||||||||||||||    
T  28665063 agagaatatataataaac-ctaatggactctaacttactaatataaa 28665018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 10354312 - 10354272
Alignment:
Q  184 aaacaaaatacgaaaaa--catactaaataatataaagttc 222  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  10354312 aaacaaaatacgaaaaaaacatactaaataatataaagttc 10354272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 42531376 - 42531202
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||  |||||||| || | ||||  ||||||||||||||| || | | |||    
T  42531376 ataagagaatatataataaaacctaatgaactttaacttactaatataaaagtccaataactcaagcccaatcctttattatctaacatctaccctcaaa 42531277  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  42531276 ctcacaatgagtcaacaa-aagcattgtgagtttttcaaacaaaatatgaaaaacatactaaatagtataaagttc 42531202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 814419 - 814585
Alignment:
Q  55 atatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactcacaat 154  Q
    ||||||||  ||| |||||| ||||||||||||||||||||| || |||||||| ||   ||||| ||||||||||||||| || | | |||||||||||    
T  814419 atatataacgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattatctaacatctaccctcaaactcacaat 814518  T
Q  155 aagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagtt 221  Q
     |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  814519 gagtcaacaagaaacattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagtt 814585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 50297547 - 50297380
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||| ||| |||||||||||  |||||||||||||||||||||||||||  |||||||||| || | ||||| ||||||||||||||| || | | |||    
T  50297547 ataagtgaacatataataaaacataatgaactctaacttactaatataaagactcaataacttaagcacaatactttattatctaacatctaccctcaaa 50297448  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataata 214  Q
      |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50297447 tccacaatgagtcaacaagaaacattgtgagtttgtcaaacaaaatacgaaaaacatactaaataata 50297380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 46691473 - 46691636
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||| |  |||||||| ||  |||||| ||||||||||||||| || | | |||    
T  46691473 ataagagaatatataataaaa-ctaatggactctaacttactagtataaaggtccaataacttaagttcaatactttattatctaacatctaccctcaaa 46691571  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaata 211  Q
    || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46691572 cttacaatgagtcaacaagaagcattgtgagtttgttaaacaaaatacgaaaaacatactaaata 46691636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 814346 - 814172
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||||||||||| ||  ||| |||||| ||||||||||||||||||||| || |||||||| ||   ||||| ||||||||||||||  || | | |||    
T  814346 ataagagaatata-aacgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattatctaacaactaccctcaaa 814248  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||| |||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  814247 ctctcaatgagtcaacaagaaacattgtgactttgtcaaacaaaatacgaagaacatactaaataatataaagttc 814172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 16463050 - 16462879
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactc 149  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||| ||| |||| || || ||||||| |||||||||||||   || | | ||||||    
T  16463050 agagaatatataataaac-ctaatggactctaacttactaatataaaggcttaatatcttaagctcaatactttattatctaacgcctaccctcaaactc 16462952  T
Q  150 acaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |  ||    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  16462951 atgatgcaacaacaagaagcattgtgagtttgtcaaacagaatatgaaaaacatactaaataatataaagttc 16462879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 22820996 - 22821058
Alignment:
Q  160 aacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  22820996 aacaagaagcattgtgagtttgtcaaacaaaatatgaaaaagatattaaataatataaagttc 22821058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 42530676 - 42530590
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||| ||||| ||   ||||| ||||||||||||||    
T  42530676 ataagagaatatataataaaacctaatgaactttaatttactaatataaaag-tcactaactcaagtccaatactttattatctaaca 42530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 50294743 - 50294654
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatata 138  Q
    |||||| |||||||||||||| |||||| ||||||||||| |||||| |||| ||||||||| || | ||||| ||||| ||||||||||||    
T  50294743 ataagataatatataataaaacctaatggactctaacttattaatat-aaaggtcaataacttaagc-caatactttatcatctaacatata 50294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 30057172 - 30057111
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataact 108  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||||||| || ||||||||    
T  30057172 ataagagaatatataacaaaatctaatggactctaacttatgaatataaatgcccaataact 30057111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 18088161 - 18088244
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||| ||  |||| || || | ||||| ||||||||| ||||    
T  18088161 agagaatatataataaac-ctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatccaaca 18088244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 2593232 - 2593288
Alignment:
Q  162 caagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||| |||||||||||||| ||| ||||||||||||||||    |||||||||||||||    
T  2593232 caagaaacattgtgagtttgttaaagaaaatacgaaaaacat----aataatataaagttc 2593288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 24137685 - 24137509
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||||||||||||||||||| |||||  |||||||||||||| | |||| || |||||||| || ||||||| |||||| ||||| || || | | |||    
T  24137685 ataagagaatatataataaaacctaatagactctaacttactagtgtaaaggcccaataactgaagctcaatactttattgtctaaaatctaccctcaaa 24137586  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacga-aaaacatactaaataatataaagttc 222  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24137585 ctcacaatgaatcaacaagaaggattgtgagtttgtcaaacaaaatacgaaaaaacatactaaataatataaagttc 24137509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 9512434 - 9512370
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  9512434 tcaacaagaagtattgtgagtttgtcatacaaaatatgaaaaacatactaaataatataaagttc 9512370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 40784132 - 40784070
Alignment:
Q  160 aacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||||| | |||||||||||||||||| ||||||||| |||||||| |||||||||    
T  40784132 aacaagaagcattattagtttgtcaaacaaaatatgaaaaacattctaaataaaataaagttc 40784070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 27315228 - 27315165
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagtt 221  Q
    ||||||||||| |||  |||||||||||||||||||| ||||| ||| |||||||||| |||||    
T  27315228 tcaacaagaagtattacgagtttgtcaaacaaaataccaaaaatatattaaataatatgaagtt 27315165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 11320499 - 11320547
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaa 96  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  11320499 ataagagaatatataataaaat-taatggactccaacttactaatataaa 11320547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 18050954 - 18050907
Alignment:
Q  175 gagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||||| ||| |||||||| |||||| ||||||||||||||    
T  18050954 gagtttgtcaaacgaaaaacgaaaaatatactatataatataaagttc 18050907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 17749753 - 17749699
Alignment:
Q  79 ctaacttactaatataaaagctcaataactaaaactcaatattttattatctaac 133  Q
    |||||||| ||||||||||  ||||||||| ||||| ||||||||||| ||||||    
T  17749753 ctaacttagtaatataaaacttcaataacttaaacttaatattttattttctaac 17749699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 11343949 - 11343997
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaa 96  Q
    |||||||| ||||||||||||  |||||| ||||||||||||||||||||    
T  11343949 ataagagagtatataataaaacttaatga-ctctaacttactaatataaa 11343997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 6643446 - 6643402
Alignment:
Q  51 gagaatatataataaaatctaatgaactctaacttactaatataa 95  Q
    |||||||||||||||||| ||||  |||||| |||||||||||||    
T  6643446 gagaatatataataaaatttaattgactctatcttactaatataa 6643402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 10741855 - 10741702
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactc 149  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||  | |||||||| || | ||||||||||||||||||||| || | | ||||||    
T  10741855 agagaatatataataaa-tctaatggactctaactttctaatataaagacccaataacttaagcccaatattttattatctaacatctaccctcaaactc 10741757  T
Q  150 acaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacata 204  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10741756 acaatgagtcaacaagaagcattgtaagtttgtcaaacaaaatacgaaaaacata 10741702  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 18984584 - 18984414
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||||||| || ||||||   || | |||||||||||||| |||||| || | | |||    
T  18984584 ataagagaatatataataaaacataatgtactctaacttactaatataaaggcccaataatctaagcccaatattttattatttaacatctaccctcaaa 18984485  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||    
T  18984484 ctcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaa-atactaagtaatataaa 18984414  T

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Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 33424005 - 33424179
Alignment:
Q  51 gagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactca 150  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||  | |||||||| || ||||||| ||||||||||||| |  | | | |||||||    
T  33424005 gagaatatataataaaacctaatgaactttaacttactaatataaagacgcaataacttaagctcaatactttattatctaacgtcaaccctcaaactca 33424104  T
Q  151 caataagtcaacaag---aagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||| ||||||||||   |||||||  || ||| |||| ||||||||||||||||||||||||||||||||||||    
T  33424105 caatgagtcaacaagaataagcattacgaatttttcaatcaaaatacgaaaaacatactaaataatataaagttc 33424179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 9290678 - 9290839
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaa 146  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||               ||||||||||||||| || | | |||    
T  9290678 ataagagaatatataataaaacctaatggactctaacttattaatataaaggctcaatac--------------tttattatctaacatctaccctcaaa 9290763  T
Q  147 ctcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    |||||||| |||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||    
T  9290764 ctcacaatgagtcaacaagaagcattgtgagtttgtttgacaaaatacgaaaagcatactaaataatataaagttc 9290839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 21862574 - 21862477
Alignment:
Q  125 ttatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatataaagttc 222  Q
    ||||||||||| || | | | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21862574 ttatctaacatctagcctcagactcacaatgagtcaacaagaagcattgtgagtttgtcaagcaaaatacgaaaaacatactaaataatataaagttc 21862477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 22868548 - 22868489
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataa 106  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  22868548 ataagagaatatataataaaacctaatggactctaacttactaatataaaagcccaataa 22868489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 21862773 - 21862689
Alignment:
Q  50 agagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||||  | ||||| || || ||||||| ||||||||||||||    
T  21862773 agagaatatataataaaacctaatgcactctaacttgctaatataaagacccaatagcttaagctcaatactttattatctaaca 21862689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 28063138 - 28063198
Alignment:
Q  163 aagaagcattgtgagtttgtcaaacaaaatacgaa-aaacatactaaataatataaagttc 222  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||    
T  28063138 aagaagcattgtgattttgttaaacaaaatacgaagaaacatactaaataatataaagttc 28063198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 8701776 - 8701721
Alignment:
Q  161 acaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatata 216  Q
    ||||||||||||||||||||||||||||||| || || ||||||||||||||||||    
T  8701776 acaagaagcattgtgagtttgtcaaacaaaacacaaacaacatactaaataatata 8701721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 5986884 - 5986937
Alignment:
Q  163 aagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataatata 216  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  5986884 aagaagcattgtgagtttgtgaaacaaaatacgaacaacatattaaataatata 5986937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 18792867 - 18792954
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    ||||||||||||| |||||||  ||||| ||| |||||||||||||||   ||||||||||| || | ||||| ||||||||||||||    
T  18792867 ataagagaatatacaataaaacttaatgcactttaacttactaatatattggctcaataactgaagcccaatagtttattatctaaca 18792954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 2131686 - 2131729
Alignment:
Q  160 aacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacat 203  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  2131686 aacaagaagcattatgagtttgtcaaacaaaatatgaaaaacat 2131729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 9365236 - 9365292
Alignment:
Q  158 tcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataata 214  Q
    ||||||||||| ||| |||||||||||||| ||| || ||||||||| |||||||||    
T  9365236 tcaacaagaagtattatgagtttgtcaaacgaaaaacaaaaaacatattaaataata 9365292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 14306 - 14448
Alignment:
Q  76 actctaacttactaatataaaagctcaataactaaaactcaatattttattatctaacatatatcttaaaactcacaataagtcaacaagaagcattgtg 175  Q
    ||||||||||||||||||||| || | |||| | || | |||||||||||||| |||||| || | | ||||||||||| |||||||  ||||||||||     
T  14306 actctaacttactaatataaaggccccataatttaagcccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgggaagcattgta 14405  T
Q  176 agtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    | ||||||||||||||||||||||||||||||| |||||||||    
T  14406 attttgtcaaacaaaatacgaaaaacatactaattaatataaa 14448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 11274 - 11187
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    ||||||||||||| |||||||  ||||| ||| |||||||||||||||   ||||||||||| || | ||||| ||||||||||||||    
T  11274 ataagagaatatacaataaaacttaatgcactttaacttactaatatattggctcaataactgaagcccaatagtttattatctaaca 11187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 406269 - 406356
Alignment:
Q  47 ataagagaatatataataaaatctaatgaactctaacttactaatataaaagctcaataactaaaactcaatattttattatctaaca 134  Q
    |||| ||||||||||||||||  ||| | |||||||||| |||||||||| || |||||||| ||||  |||| ||||||||||||||    
T  406269 ataatagaatatataataaaacttaaaggactctaacttgctaatataaaggcccaataacttaaacctaatactttattatctaaca 406356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 61983 - 62027
Alignment:
Q  174 tgagtttgtcaaacaaaatacgaaaaacatactaaataatataaa 218  Q
    |||||||||||||||||| || ||||| ||||| |||||||||||    
T  61983 tgagtttgtcaaacaaaaaacaaaaaaaatactcaataatataaa 62027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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