View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9238_low_5 (Length: 488)
Name: NF9238_low_5
Description: NF9238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9238_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 10 - 470
Target Start/End: Original strand, 43029694 - 43030154
Alignment:
| Q |
10 |
tttggtgtttggttcttcgtttcaaagagttgcttcttgttttgttcaaggactcacagagagactaactctgattcaaccaattggtaataactctgct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029694 |
tttggtgtttggttcttcgtttcaaagagttgcttcttgttttgttcaaggactcacagagagactaactctgattcaaccaattggtaataactctgct |
43029793 |
T |
|
| Q |
110 |
ggatcagatacaaaatcaatgatgaacataatggatgctgcatcagaagaaatggaagaagcattcaagttggtttatgaaaattgtccacatattcaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029794 |
ggatcagatacaaaatcaatgatgaacataatggatgctgcatcagaagaaatggaagaagcattcaagttggtttatgaaaattgtccacatattcaat |
43029893 |
T |
|
| Q |
210 |
ttggacattttgtggctaattccataatattggaagcctttgagggtgagagttttcttcatgtggttgatcttggtatgagccttggtcttccacatgg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43029894 |
ttggacattttgtggctaattccataatattggaagcctttgagggtgagagttttcttcatgtggttgatcttggcatgagccttggtcttccacatgg |
43029993 |
T |
|
| Q |
310 |
acaccaatggcgaggactaattcaaagtctcgcggatcgatccagccaccgtgttcggaggcttaggatcacagcgattggtctatgcattgctagaatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029994 |
acaccaatggcgaggactaattcaaagtctcgcggatcgatccagccaccgtgttcggaggcttaggatcacagcgattggtctatgcattgctagaatc |
43030093 |
T |
|
| Q |
410 |
caagtcattggtgaagaactctcaatttacgcgaaaaacttggggattcatttggagttct |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43030094 |
caagtcattggtgaagaactctcaatttacgcgaaaaacttggggattcatttggaattct |
43030154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University