View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9238_low_9 (Length: 451)
Name: NF9238_low_9
Description: NF9238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9238_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 128 - 436
Target Start/End: Original strand, 52548586 - 52548908
Alignment:
| Q |
128 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaa--------------catacaataagctaacatagagctcaatatg |
213 |
Q |
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| T |
52548586 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaatctaatgtaggttacatacaataagctaacatagagctcaatatg |
52548685 |
T |
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| Q |
214 |
cgtatataagtatcttatactcttctaattcaggaatgagaaatcaatttcctttctctttcctttgttcataatagttatactagttagttattcttct |
313 |
Q |
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| T |
52548686 |
cgtatataagtatcttatactcttctaattcagtaatgagaaatcaatttcctttctctttcctttgttcataatagttatactagttagttattcttct |
52548785 |
T |
|
| Q |
314 |
cattgactatataagtcttaggtattcattctttcttaatcaagataacttccattttacttttctctaacttctatacaaatagttataatagttgaac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52548786 |
cattgactatataagtcttaggtattcattctttcttaatcaatataacttccattttacttttctctaacttctatacaaatagttataatagttgaac |
52548885 |
T |
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| Q |
414 |
aaacttcatactaatgtgaaact |
436 |
Q |
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| T |
52548886 |
aaacttcatactaatgtgaaact |
52548908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 26619328 - 26619274
Alignment:
| Q |
128 |
gttagaaatgattacttattcattgcataactttgagtttgttaagtgttagcaa |
182 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |
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| T |
26619328 |
gttagaaatgattacttaatcattgcatagctttgagtttgttatgtgttagcaa |
26619274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 26619255 - 26619219
Alignment:
| Q |
187 |
caataagctaacatagagctcaatatgcgtatataag |
223 |
Q |
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|||||||||| ||||||| |||||||||||||||||| |
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| T |
26619255 |
caataagctatcatagagttcaatatgcgtatataag |
26619219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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