View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_high_10 (Length: 351)
Name: NF9239_high_10
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_high_10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 55336429 - 55336779
Alignment:
| Q |
1 |
catttccttcttttctttttgcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagcttt |
100 |
Q |
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| T |
55336429 |
catttccttcttttctttttgcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagcttt |
55336528 |
T |
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| Q |
101 |
gtcaagtgccaacactttctccaatgaagattccacatcttcctccgtaataagattaccaagattgattttggtttggatttgagtccatagttgtttg |
200 |
Q |
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| T |
55336529 |
gtcaagtgccaacactttctccaatgaagattccacatcttcctcagtaataagattaccaagattgattttggtttggatttgagtccatagttgtttg |
55336628 |
T |
|
| Q |
201 |
aacaatcttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaagagtgg |
300 |
Q |
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| T |
55336629 |
aacaatcttgtagcattgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacataccagttgctgctgaaaacagaagagtgg |
55336728 |
T |
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| Q |
301 |
atgatagtttcagagccaacagttgtgcaccatcagcaccagttgcggctg |
351 |
Q |
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| T |
55336729 |
atgatagtttcagagccaacagttgtgcaccatcagcaccagttgcggctg |
55336779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 55330994 - 55331116
Alignment:
| Q |
1 |
catttccttcttttctttttgcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagcttt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||| |
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| T |
55330994 |
catttccttcttttctttttgctggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagcttt |
55331093 |
T |
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| Q |
101 |
gtcaagtgccaacactttctcca |
123 |
Q |
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| T |
55331094 |
gtcaagtgccaaaactttctcca |
55331116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 55331185 - 55331309
Alignment:
| Q |
195 |
tgtttgaacaatcttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaa |
294 |
Q |
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|||||||| ||||||||||| | | ||||| || ||||| |||||||||||||| |||||||| ||||| | |||| || ||||| ||||| | || |
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| T |
55331185 |
tgtttgaataatcttgtagcgtttctttgttcttccgcgagttgcgaaggctgaattttgttcataataagaagtatacttgtagctgcagaaaataaaa |
55331284 |
T |
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| Q |
295 |
gagtggatgatagtttcagagccaa |
319 |
Q |
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| T |
55331285 |
gtgtggatgatagtttaagagccaa |
55331309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 8395492 - 8395392
Alignment:
| Q |
23 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcc |
122 |
Q |
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|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| ||| |
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| T |
8395492 |
aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc |
8395393 |
T |
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| Q |
123 |
a |
123 |
Q |
| |
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| T |
8395392 |
a |
8395392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 8406080 - 8406180
Alignment:
| Q |
23 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcc |
122 |
Q |
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|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| ||| |
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| T |
8406080 |
aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc |
8406179 |
T |
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| Q |
123 |
a |
123 |
Q |
| |
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| |
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| T |
8406180 |
a |
8406180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 8368481 - 8368541
Alignment:
| Q |
38 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
98 |
Q |
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| T |
8368481 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8368541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 8400929 - 8400869
Alignment:
| Q |
38 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
98 |
Q |
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||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
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| T |
8400929 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8400869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 8406246 - 8406322
Alignment:
| Q |
192 |
agttgtttgaacaatcttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaa |
268 |
Q |
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|||||||||||||||||||||||| | | |||||||| | ||| || || || || || ||||||||||||||||| |
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| T |
8406246 |
agttgtttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataagcaa |
8406322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 8422506 - 8422446
Alignment:
| Q |
38 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
98 |
Q |
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||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
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| T |
8422506 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8422446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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