View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_high_11 (Length: 330)
Name: NF9239_high_11
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 35665 - 35380
Alignment:
| Q |
1 |
aatacatataaaaactgaatgaaagtagttgatgaataaagaaagaacgaaagaataatacttggtagaatccaacagagtttagcattaggctaaaatt |
100 |
Q |
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| T |
35665 |
aatacatataaaaactgaatgaaagtagttgatgaataaagaaagaacgaaagaaaaatacttggtagaatccaacagagtttagcattaggctaaaatt |
35566 |
T |
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| Q |
101 |
catggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagt |
200 |
Q |
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| T |
35565 |
catggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagt |
35466 |
T |
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| Q |
201 |
ataccaacgagagcggtaacagcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
286 |
Q |
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| T |
35465 |
ataccaacgagagcggtaacagcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
35380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 8677160 - 8677325
Alignment:
| Q |
58 |
atacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagg |
157 |
Q |
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||||||||||||||||||| || || ||||| ||||| || ||||| | |||||||| | |||||| || ||||||||||| ||||||||||| ||| |
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| T |
8677160 |
atacttggtagaatccaacggaattgagcatgaggctcaagttcatcccggtgatagatatattggcaacagcagagaaccaaataagctcccacaaagg |
8677259 |
T |
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| Q |
158 |
gacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaa |
226 |
Q |
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|||||||| |||| || |||||||||||||| |||| | ||| || ||||| ||||||||||| |
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| T |
8677260 |
aacatgctt---agaagcagaataaccggtagcatttgagacgagaccgacaagagcagtaacagcaaa |
8677325 |
T |
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