View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9239_high_2 (Length: 814)

Name: NF9239_high_2
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9239_high_2
NF9239_high_2
[»] chr7 (1 HSPs)
chr7 (18-804)||(40382694-40383480)


Alignment Details
Target: chr7 (Bit Score: 771; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 18 - 804
Target Start/End: Complemental strand, 40383480 - 40382694
Alignment:
Q  18 aaattagtctcaggaactaatggtggtaatggaaacggtaactcaattgcgtcctcagttgccacttttgcaaatccgttttggattgaaatggcagtta 117  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40383480 aaattagtctcaggaactaacggtggtaatggcaacggtaactcaattgcgtcctcagttgccacttttgcaaatccgttttggattgaaatggcggtta 40383381  T
Q  118 ttggaaaacggtctctactaaactcaagacggatgccggaattattcggaatccgtctcggtgcagttctggttaccggaggaatcttggccaccatctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383380 ttggaaaacggtctctactaaactcaagacggatgccggaattattcggaatccgtctcggtgcagttctggttaccggaggaatcttggccaccatctt 40383281  T
Q  218 ttaccgtcttgacgattcaccaaaaggtgttcaagagcgtttgggtttcttcgcctttgccatgtcaacaaccttctacacttgtgctgaagctatcccc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383280 ttaccgtcttgacgattcaccaaaaggtgttcaagagcgtttgggtttcttcgcctttgccatgtcaacaaccttctacacttgtgctgaagctatcccc 40383181  T
Q  318 gttttccttcaagagcgttacattttcatgagagaaactgcttacaacgcttaccgtcgttcttcctatgtccttgcacactccatcatctctctccctg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383180 gttttccttcaagagcgttacattttcatgagagaaactgcttacaacgcttaccgtcgttcttcctatgtccttgcacactccatcatctctctccctg 40383081  T
Q  418 cactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgggacatctggtttcctcttttactttttcaccatttt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383080 cactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgggacatctggtttcctcttttactttttcaccatttt 40382981  T
Q  518 agcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatgcttggtttcaccgttgtggttgctattttagcttac 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40382980 agcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatgcttggtttcaccgttgtggttgctattttagcttac 40382881  T
Q  618 tttcttctcttcagtggattcttcatcagtagggataggattccaccttactggatatggttccattacctatcactggtgaagtacccttttgaaggag 717  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40382880 tttcttctcttcagtggattcttcataagtagggataggattccaccttactggatatggttccattacctatcactggtgaagtacccttttgaaggag 40382781  T
Q  718 tgcttcagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttgataacactccgcttggtgatgtcc 804  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40382780 tgcttcagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttgataacactccgcttggtgatgtcc 40382694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University