View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9239_high_4 (Length: 671)

Name: NF9239_high_4
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9239_high_4
NF9239_high_4
[»] chr2 (3 HSPs)
chr2 (12-185)||(44911625-44911798)
chr2 (12-155)||(3769033-3769176)
chr2 (361-412)||(37844844-37844896)
[»] chr1 (1 HSPs)
chr1 (12-155)||(3928541-3928684)
[»] chr4 (2 HSPs)
chr4 (12-155)||(6353891-6354034)
chr4 (364-410)||(24936214-24936260)
[»] chr6 (1 HSPs)
chr6 (46-130)||(30372845-30372929)
[»] chr7 (2 HSPs)
chr7 (347-410)||(1431428-1431492)
chr7 (348-409)||(27481415-27481481)
[»] chr3 (2 HSPs)
chr3 (59-154)||(36501281-36501377)
chr3 (363-403)||(32417255-32417295)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 4e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 44911798 - 44911625
Alignment:
Q  12 ttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatgg 111  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44911798 ttggtgttgttgtgatgacgatgaacctaatgaaaattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggatgttttatgg 44911699  T
Q  112 tagttaaattcctgaccctctgtgatggtgtgaaataattttgataaacatgatgatgctttgaaagcataggc 185  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44911698 tagttaaattcctgaccctctgtcatggtgtgaaataattttgataaacatgatgatgctttgaaagcataggc 44911625  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 3769033 - 3769176
Alignment:
Q  12 ttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatgg 111  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3769033 ttggtgttgctgtgatgacgatgaaccaaatgaaaattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttctatgg 3769132  T
Q  112 tagttaaattcctgaccctctgtgatggtgtgaaataattttga 155  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  3769133 tagttaaattcctgaccccctgtgatggtgtgaaataattttga 3769176  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 37844896 - 37844844
Alignment:
Q  361 cttaagtgcttatagcataaatgcttat-ttagaagtgtttatgtataagtca 412  Q
    ||||||||||||||||||||| ||||||  || |||||||||| |||||||||    
T  37844896 cttaagtgcttatagcataaaagcttatcatataagtgtttatctataagtca 37844844  T

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Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 3928684 - 3928541
Alignment:
Q  12 ttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatgg 111  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  3928684 ttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaagatagatgaatgacatgaacggtaaattgaaggttctatgg 3928585  T
Q  112 tagttaaattcctgaccctctgtgatggtgtgaaataattttga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3928584 tagttaaattcctgaccctctgtgatggtgtgaaataattttga 3928541  T

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Target: chr4 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 6354034 - 6353891
Alignment:
Q  12 ttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatgg 111  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6354034 ttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttctatgg 6353935  T
Q  112 tagttaaattcctgaccctctgtgatggtgtgaaataattttga 155  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||    
T  6353934 tagtttaattcatgaccctctctgatggtgtgaaataattttga 6353891  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 24936214 - 24936260
Alignment:
Q  364 aagtgcttatagcataaatgcttatttagaagtgtttatgtataagt 410  Q
    |||||||||||||||||| |||||| || ||||| ||||||||||||    
T  24936214 aagtgcttatagcataaaggcttatatataagtggttatgtataagt 24936260  T

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Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 30372845 - 30372929
Alignment:
Q  46 aattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccct 130  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  30372845 aattaatagaaacgagaagatggaagatagatgaatgacatgaacggtaaattggaggatctatggtagttaaattcctgaccct 30372929  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 1431492 - 1431428
Alignment:
Q  347 ttttggataaataacttaagtgcttatagcataaatgcttat-ttagaagtgtttatgtataagt 410  Q
    ||||||||||| ||||||||| |||||||||||| |||||||  || ||||||||||||||||||    
T  1431492 ttttggataaacaacttaagttcttatagcataagtgcttatcatataagtgtttatgtataagt 1431428  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 27481481 - 27481415
Alignment:
Q  348 tttggataaataacttaa----gtgcttatagcataaatgcttatt-tagaagtgtttatgtataag 409  Q
    |||||||||| |||||||    |||||||||||||||||| ||||| || |||||||||||||||||    
T  27481481 tttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataag 27481415  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 36501281 - 36501377
Alignment:
Q  59 gagaagatggaaga-tagatgaatggcatgaacggtaaa-ttggaggttttatggtagttaaattcctgaccctctgtgatggtgtgaaataattttg 154  Q
    |||||||||||||| | ||||||||||||||| | |||| ||||| |||||| ||||||| ||| |||| |||| || ||||||||||||| ||||||    
T  36501281 gagaagatggaagaatcgatgaatggcatgaaggataaagttgga-gttttagggtagttgaatccctggccctttgcgatggtgtgaaatgattttg 36501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 32417295 - 32417255
Alignment:
Q  363 taagtgcttatagcataaatgcttatttagaagtgtttatg 403  Q
    ||||||||||||| |||||||||||| || |||||||||||    
T  32417295 taagtgcttatagtataaatgcttatatataagtgtttatg 32417255  T

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