View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_10 (Length: 649)
Name: NF9239_low_10
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 66 - 640
Target Start/End: Original strand, 9994129 - 9994706
Alignment:
| Q |
66 |
gttctctgatacgtttaattcagtaaagtatgacactaaaaattggacatagctaaaatgcatattaagtattggaacacaagctaaaatgccgtgcagg |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994129 |
gttctctgatacgtttaattcagtaaagtatgacactaaaaattggacatagctaaaatgcatattaagtattggaacacaagctaaaatgccgtgcagg |
9994228 |
T |
|
| Q |
166 |
agaatttgggagggagagagaagaaaaacaacagcacaattgttagaatccttatcagaatttcaataacccttatctctttatataaaaccactaataa |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9994229 |
agaatttgggagggagagagaagaaaaacaacagcacaattgttagaatccttatcagaatttcaataacctttatctctttatataaaaccactaataa |
9994328 |
T |
|
| Q |
266 |
cccttatctctttatatacaacacatatagtttacaaatatgctcttgactac---ctaaaatggccactggatccctcctatattaagtagggaatgaa |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994329 |
cccttatctctttatatacaacacatatagtttacaaatatgctcttgactacttcctaaaatggccactggatccctcctatattaagtagggaatgaa |
9994428 |
T |
|
| Q |
363 |
ggaaagccgattcactaataaccgggatgttcgaaaaagtaccaagaagagcacacctgatggaatgcatgatcatgacaatatatgccaacgctacacc |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994429 |
ggaaagccgattcactaataaccgggatgttcgaaaaagtaccaagaagagcacacctgatggaatgcatgatcatgacaatatatgccaacgctacacc |
9994528 |
T |
|
| Q |
463 |
agcccaataatacatcccaagtgttcccttgaagtgtagaagtggcataaaattgcttacaacccatactatctgcagagcaatttccagtagcattccc |
562 |
Q |
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| T |
9994529 |
agcccaataatacatcccaagtgttcccttgaagtgtagaagtagcataaaattgcttacaacccatactatctgcagagcaatttccagtagcattccc |
9994628 |
T |
|
| Q |
563 |
atcattacatggaatctgaagataacggcgaagtccttgtttttaacgactaccatgatagccaaatagcagtataat |
640 |
Q |
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| T |
9994629 |
atcattacatggaatctgaagataacggggaagtccttgtttttaacgactaccatgatagccaaatagcagtataat |
9994706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 291 - 640
Target Start/End: Complemental strand, 38118448 - 38118096
Alignment:
| Q |
291 |
tatagtttacaaatatgctcttgactac---ctaaaatggccactggatccctcctatattaagtagggaatgaaggaaagccgattcactaataaccgg |
387 |
Q |
| |
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||||||||||||||| || ||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| || |
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| T |
38118448 |
tatagtttacaaataagcccttgactacttcctaaaacggccgctggaaccctcctatattaagtagggaatgaaggaaagctgattcgctaataacagg |
38118349 |
T |
|
| Q |
388 |
gatgttcgaaaaagtaccaagaagagcacacctgatggaatgcatgatcatgacaatatatgccaacgctacaccagcccaataatacatcccaagtgtt |
487 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
38118348 |
gatgttcgaaaatgtaccaagaagagcacacctgatggaatgcatgattatgacaatatatgccaacgccacaccagcccagtaatacatcccaagtgtt |
38118249 |
T |
|
| Q |
488 |
cccttgaagtgtagaagtggcataaaattgcttacaacccatactatctgcagagcaatttccagtagcattcccatcattacatggaatctgaagataa |
587 |
Q |
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||||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118248 |
cccttgaagtgtatcagtggcatgaaattgcttgcaacccatacaatctgcagagcaatttccagtagcattcccatcattacatggaatctgaagataa |
38118149 |
T |
|
| Q |
588 |
cggcgaagtccttgtttttaacgactaccatgatagccaaatagcagtataat |
640 |
Q |
| |
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|| ||||||| | ||||| || || ||||||||||||||||||||||||||| |
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| T |
38118148 |
tggggaagtccctattttttaccaccaccatgatagccaaatagcagtataat |
38118096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 297 - 579
Target Start/End: Complemental strand, 38112485 - 38112200
Alignment:
| Q |
297 |
ttacaaatatgctcttgactac---ctaaaatggccactggatccctcctatattaagtagggaatgaaggaaagccgattcactaataaccgggatgtt |
393 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| ||||| |||||||||||||| |||| ||||||||| ||| |||||||||||||| || ||||| |
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|
| T |
38112485 |
ttacaaatatgctcttgactacttcctaaaacggccgctggaaccctcctatattaaataggcaatgaaggagagctgattcactaataacaggaatgtt |
38112386 |
T |
|
| Q |
394 |
cgaaaaagtaccaagaagagcacacctgatggaatgcatgatcatgacaatatatgccaacgctacaccagcccaataatacatcccaagtgttcccttg |
493 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| |
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| T |
38112385 |
cgaaaatgtaccaagaagagcacacctgatggaatgcatgattatgacaatatatgccaatgccaaaccagcccagtaatacatcccaagtgttccctta |
38112286 |
T |
|
| Q |
494 |
aagtgtagaagtggcataaaattgcttacaacccatactatctgcagagcaatttccagtagcattcccatcattacatggaatct |
579 |
Q |
| |
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||||||| | |||||| |||||||| |||| |||||||||| | |||| |||||||||||||||||||||||||||||||||| |
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| T |
38112285 |
aagtgtatcaatggcatgtaattgcttgcaacagatactatctggaaagcagtttccagtagcattcccatcattacatggaatct |
38112200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 38106772 - 38106654
Alignment:
| Q |
18 |
aagcagaactggcattaagctgaattaattctcctcactgccaaatacgttctctgatacgtttaattc---agtaaagtatgacactaaaaattggaca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| || ||||| | |||||| ||||||| ||||| | |
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| T |
38106772 |
aagcagaactggcattaagctgaattaattctcctcacggccaaatacatcctctgatacattaaattccttcctgaagtataacactaataattgaagg |
38106673 |
T |
|
| Q |
115 |
tagctaaaatgcatattaa |
133 |
Q |
| |
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||||||||||||||||||| |
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| T |
38106672 |
tagctaaaatgcatattaa |
38106654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 38112691 - 38112618
Alignment:
| Q |
180 |
agagagaagaaaaacaacagcacaattgttagaatccttatcagaatttcaataacccttatctctttatataa |
253 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||| | ||||||||| |
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|
| T |
38112691 |
agagacaagaaaaacaacacaacaattattagaatccatatcagaatttcaatatcccttatatatttatataa |
38112618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 38118637 - 38118572
Alignment:
| Q |
186 |
aagaaaaacaacagcacaattgttagaatccttatcagaatttcaataacccttatctctttatataa |
253 |
Q |
| |
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||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |
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|
| T |
38118637 |
aagaaaaacaacagcccaattattagaatccgtatcagaatttcaataa--cttatatctttatataa |
38118572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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