View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_11 (Length: 595)
Name: NF9239_low_11
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 581
Target Start/End: Complemental strand, 3362006 - 3361442
Alignment:
| Q |
15 |
gttattgttttgtgtttcaggaaatagttacttgcatttcatacatggcttttaatctatggagttcatcttttgatcaaggtttcttattttacctcat |
114 |
Q |
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| T |
3362006 |
gttactgttttgtgtttcaggaaatagttacttgcatttcatacatggcttttaatctatggagttcatcttttgatcaaggtttcttattttacctcat |
3361907 |
T |
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| Q |
115 |
ctttggttattaattatctatatcagttttggtgttatacttatatgataaatgagtttatatctttttgcatgtactttgctggtgttagtttcctatg |
214 |
Q |
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| T |
3361906 |
ctttggttattaattatctatatcagttttggtgttatacttatatgataaatgagtttatatctttttgcatgtactttgctggtgttagtttcctatg |
3361807 |
T |
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| Q |
215 |
atggtaactactctgagagtcttgagtgccattatgattactttcactgtggatatggtatttattcttatactttctctccctctattttgtttggccc |
314 |
Q |
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| T |
3361806 |
atggtaactactctgag--tcttgagtgccactatgattactttcactgtggatatggtatttattcttatactttctctccctctattttgtttggccc |
3361709 |
T |
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| Q |
315 |
tttttaggtgtctctatgttggtacttcgtatttctctgtttgttagttgagattttggtatccgaaccataggactgactaattcgaggagataaatcc |
414 |
Q |
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||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
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| T |
3361708 |
tttttaggtgtctctatgttggtacttggtatttttttgtttgttagttgagatttcggtatccgaaccataggactgactaattcgaggagacaaattc |
3361609 |
T |
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| Q |
415 |
caccgtgtatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatgtggaatcatgtgttcaagttttgag |
514 |
Q |
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| T |
3361608 |
aaccgtctatgttgataatttactgtagctttctgttgagttttgcagatgagattgaagaacatgccttgaatgtggaatcatgtgttcaagttttgag |
3361509 |
T |
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| Q |
515 |
aattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaat |
581 |
Q |
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| T |
3361508 |
aattttgaacaccaaggcagatgttgaaattgagaaactcgaaaatgatctcttgtgccttgagaat |
3361442 |
T |
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