View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_12 (Length: 570)
Name: NF9239_low_12
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 53 - 554
Target Start/End: Original strand, 42964901 - 42965401
Alignment:
| Q |
53 |
attttaaaaagagaaatagtttccttttttagttgacatacacatatca-cattttgaaaatgactctatttctaaaactagcaaattgattttctgtct |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42964901 |
attttaaaaagagaaatagtttccttttttagttgacatacacatatcatcatatggaaaatgactctatttctaaaactagcaaattgattttctgtct |
42965000 |
T |
|
| Q |
152 |
tagagttaatcatgattcttgtctttttcatgttgctcttgaagtaaagatttgtgccacaaatattacatgttcaagttccaaaagctactccaaagaa |
251 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42965001 |
tagagttaatcatgattcttgtcttttttatgttgctcttgaagtaaagatttgtgccacaaatattacatgttcaagttccaaaagctactccaaagaa |
42965100 |
T |
|
| Q |
252 |
caaggatctcatacagatacattacacagtcnnnnnnnccttaataatgtgaaacatagattaataataatacatcaaatatagttagagggggcaaaa- |
350 |
Q |
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| T |
42965101 |
caaggatctcatacagatacattacacagtcaaaaaaaccttaataatgtgaaacatagattaataata---catcaaatatagttagagggggcaaaaa |
42965197 |
T |
|
| Q |
351 |
aaccttggcatagaggtagaaagttgatgagccatatcataaggagacagagcaggaatttgacagcaccaagagttgccattggtgggtatacagtgac |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42965198 |
aaccttggcatagaggtagaaagttgatgagccatatcataaggagacagagcaggaatttgacagcaccaagagttgccattggtgggtatacagtgac |
42965297 |
T |
|
| Q |
451 |
agaagagcactcactcactcaccgaagaagctgatttgcaacctctaagtggcttcctttggttggtcttgttttgtgtgtgcacaacatatataaatac |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42965298 |
agaagagcactcactcactcaccgaagaagctgatttgcaacctctaagtggcttcctttggttggtcttgttttgtgtgtgcacaacatatataaatac |
42965397 |
T |
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| Q |
551 |
ctaa |
554 |
Q |
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|||| |
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| T |
42965398 |
ctaa |
42965401 |
T |
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