View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_15 (Length: 481)
Name: NF9239_low_15
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 38 - 464
Target Start/End: Complemental strand, 40484067 - 40483641
Alignment:
| Q |
38 |
tatgaataaaaaattaagctgtttctcttactttgggggtaaatgtggttaaaactccagaaacaaattttaaggcctcatatgacgattgagcagggtc |
137 |
Q |
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| T |
40484067 |
tatgaataaaaaattaagctgtttctcttactttgggggtaaatgtggttaaaactccagaaacaaattttaaggcctcatatgacgattgagcagggtc |
40483968 |
T |
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| Q |
138 |
tgcatagatttctagaacaggtaaccaggttctgttaaagtgctgatataagatgaatacattacagaaactagcacaggtattaggtcagctgtagagt |
237 |
Q |
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| T |
40483967 |
tgcatagatttctagaacaggtaaccaggttctgttaaagtgctgatataagatgaatacattacagaaactagcacaggtattaggtcagctgtagagt |
40483868 |
T |
|
| Q |
238 |
acctcctttaaattttgtttgctcagcaaaggctttggcctgtattaaatataggtattagctacgaaaattccagcattctaagatgttaggagaatgt |
337 |
Q |
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| T |
40483867 |
acctcctttaaattttgtttgctcagcaaaggctttggcctgtattaaatataggtattagctacgaaaattccagcattctaagatgttaggagaatgc |
40483768 |
T |
|
| Q |
338 |
agaaaattccgcgtacctgatcaatgttgccaggtccaatcaatacaagtgctacaccagatgcgtccattatatcctgttggtagagcaaaatcaaaac |
437 |
Q |
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| T |
40483767 |
agaaaattccgcgtacctgatcaatgttgccaggtccaatcaatacaagtgctacaccagatgcgtccattatatcctgttggtagagcaaaatcaaaac |
40483668 |
T |
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| Q |
438 |
aagagaacgtaaagtgcagcttacaac |
464 |
Q |
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| T |
40483667 |
aagagaacgtaaagtgcagcttacaac |
40483641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 17647852 - 17647738
Alignment:
| Q |
284 |
aaatataggtattagctacgaaaattccagcattctaagatgttaggagaatgtagaaaattccgcgtacctgatcaatgttgccaggtccaatcaatac |
383 |
Q |
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|||||||||| ||||||| |||||| |||| |||||||| ||||||||||| || |||| | || | || |||||||||| ||| ||||||||||||| |
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| T |
17647852 |
aaatataggtggtagctac-aaaattttagcaatctaagatattaggagaatgaagcaaatccagcat-ccagatcaatgtttccaagtccaatcaatac |
17647755 |
T |
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| Q |
384 |
aagtgctacaccagatg |
400 |
Q |
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| T |
17647754 |
aagtgccacactagatg |
17647738 |
T |
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