View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9239_low_18 (Length: 459)

Name: NF9239_low_18
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9239_low_18
NF9239_low_18
[»] chr1 (8 HSPs)
chr1 (1-449)||(36884994-36885437)
chr1 (364-447)||(31125938-31126023)
chr1 (363-449)||(21035986-21036081)
chr1 (406-449)||(29256885-29256928)
chr1 (406-447)||(11788032-11788073)
chr1 (406-442)||(10654082-10654118)
chr1 (406-442)||(36657798-36657834)
chr1 (406-442)||(52412651-52412687)
[»] chr3 (9 HSPs)
chr3 (406-449)||(53841080-53841123)
chr3 (406-449)||(29248372-29248415)
chr3 (406-449)||(50819273-50819316)
chr3 (406-449)||(50856548-50856591)
chr3 (406-449)||(54081574-54081617)
chr3 (364-408)||(9028193-9028237)
chr3 (406-442)||(12123143-12123179)
chr3 (364-396)||(28688342-28688374)
chr3 (407-447)||(31514154-31514194)
[»] scaffold0236 (1 HSPs)
scaffold0236 (364-449)||(11504-11598)
[»] chr8 (7 HSPs)
chr8 (406-447)||(40094528-40094569)
chr8 (406-449)||(44255152-44255195)
chr8 (403-449)||(18017840-18017886)
chr8 (406-447)||(18018078-18018119)
chr8 (406-447)||(37393530-37393571)
chr8 (406-442)||(8653989-8654025)
chr8 (406-442)||(18622044-18622080)
[»] chr6 (3 HSPs)
chr6 (406-447)||(12903274-12903315)
chr6 (406-447)||(33972498-33972539)
chr6 (406-442)||(31029577-31029613)
[»] chr5 (3 HSPs)
chr5 (403-442)||(38416431-38416470)
chr5 (406-448)||(31908983-31909025)
chr5 (406-442)||(5087860-5087896)
[»] chr4 (4 HSPs)
chr4 (364-449)||(29864178-29864272)
chr4 (364-408)||(11242804-11242848)
chr4 (406-442)||(40067645-40067681)
chr4 (364-408)||(48209950-48209994)
[»] chr2 (7 HSPs)
chr2 (403-449)||(12303835-12303881)
chr2 (406-447)||(4104451-4104492)
chr2 (406-447)||(34484338-34484379)
chr2 (406-442)||(15829773-15829809)
chr2 (406-442)||(18565300-18565336)
chr2 (364-408)||(37744451-37744495)
chr2 (364-408)||(38275797-38275841)
[»] chr7 (3 HSPs)
chr7 (406-447)||(32706785-32706826)
chr7 (406-446)||(18731072-18731112)
chr7 (406-442)||(47250610-47250646)


Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 36885437 - 36884994
Alignment:
Q  1 taacacaaacacttgttattacttagaacatgaacaatgcaataaggttgttcttcttttcttatcttgtgttattgacttagtgtgtgacttgagtgtt 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36885437 taacacaaaaacttgctattacttagaacatgaacaatgcaataaggttgttcttcttttcttatcttgtgttattgacttagtgtgtgacttgagtgtt 36885338  T
Q  101 tctattttagttagtgaacacgacttgtattgtatgtaggtagatattattaatgttagtgtcggtttgcacgatgagaaaagagacagagatcaaattt 200  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36885337 tctattttagttagtgaacacgacttgtat-----gtaggtagatattattaatgtttgtgtcggtttgcacgatgagaaaagagacagagatcaaattt 36885243  T
Q  201 gattttggtgtaagagtcacgtgtattttgtctcagacaaacaacgttgcccacataggtctatactgttactg--nnnnnnncttttcacataattgtt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||         |||||||||||||||||    
T  36885242 gattttggtgtaagagtcacgtgtattttgtctcagacaaacaacgttgcccacatagg--tatactgttactgttttattttcttttcacataattgtt 36885145  T
Q  299 taataataatattattaaatcatactagattgcttcactttaatgtcttctttgtttttactttcctaaattacattttttatcccttaactatttagct 398  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||    
T  36885144 taataataatattattaaatcatactagattgcttcactttactgtcttctttgcttttactttcctaaattacatttttttatccttaactatttagct 36885045  T
Q  399 aatatcacttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  36885044 aatatcacttaattaaaattcgatttattttggttccttaacttatctctg 36884994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 447
Target Start/End: Original strand, 31125938 - 31126023
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaatatcac--ttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    ||||||| ||||||| ||||||||||||||||| || |||| |  ||||||||||||| |||||||||| |||| |||||| ||||    
T  31125938 ctaaattgcatttttgatcccttaactatttaggtagtatcgcttttaattaaaattcgatttattttgattccttaacttctctc 31126023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 21035986 - 21036081
Alignment:
Q  363 cctaaattacattttttatcccttaactatttagctaatatcactt---------aattaaaattcaatttattttggttccctaacttatctctg 449  Q
    |||||||| ||||||| || |||||||||||||| || ||||||||         |||||||||||||||||||||||| || |||||| ||||||    
T  21035986 cctaaattgcatttttgattccttaactatttagatagtatcactttggtccattaattaaaattcaatttattttggtcccttaacttctctctg 21036081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 29256885 - 29256928
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    ||||||||||||||||||||||||||| || |||||| ||||||    
T  29256885 cttaattaaaattcaatttattttggtcccttaacttctctctg 29256928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 11788073 - 11788032
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    |||||||||||||| |||||||||||| || |||||||||||    
T  11788073 cttaattaaaattcgatttattttggtcccttaacttatctc 11788032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 10654082 - 10654118
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||||||||||||| || ||||||    
T  10654082 cttaattaaaattcaatttattttggtcccttaactt 10654118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 36657834 - 36657798
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  36657834 cttaattaaaattcgatttattttggttccttaactt 36657798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 52412651 - 52412687
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||||||||||||| || ||||||    
T  52412651 cttaattaaaattcaatttattttggtcccttaactt 52412687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 53841080 - 53841123
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    ||||||||||||||||||||||||||| || |||||||||||||    
T  53841080 cttaattaaaattcaatttattttggtcccttaacttatctctg 53841123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 29248372 - 29248415
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||    
T  29248372 cttaattaaaatttaatttattttggttccttaacttctctctg 29248415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Original strand, 50819273 - 50819316
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    |||||||||||||| |||||||||||| || |||||||||||||    
T  50819273 cttaattaaaattcgatttattttggtcccttaacttatctctg 50819316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 50856591 - 50856548
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    |||||||||||||| |||||||||||| || |||||||||||||    
T  50856591 cttaattaaaattcgatttattttggtcccttaacttatctctg 50856548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 54081617 - 54081574
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||    
T  54081617 cttaattaaaattcgatttattttggttccttaacttctctctg 54081574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 9028193 - 9028237
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaatatcactt 408  Q
    |||||||||||||||  |||||||||||||||| || ||||||||    
T  9028193 ctaaattacatttttggtcccttaactatttaggtagtatcactt 9028237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 12123143 - 12123179
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  12123143 cttaattaaaattcgatttattttggttccttaactt 12123179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 28688374 - 28688342
Alignment:
Q  364 ctaaattacattttttatcccttaactatttag 396  Q
    |||||||||||||||| ||||||||||||||||    
T  28688374 ctaaattacattttttgtcccttaactatttag 28688342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 31514194 - 31514154
Alignment:
Q  407 ttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    |||||||||||||||||||||||||| || |||||| ||||    
T  31514194 ttaattaaaattcaatttattttggtcccttaacttttctc 31514154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 11598 - 11504
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaatatcactt---------aattaaaattcaatttattttggttccctaacttatctctg 449  Q
    ||||||| ||||||||||||||||||||||||| || |||| |||         |||||||||||||||||||||||| || |||||| ||||||    
T  11598 ctaaattgcattttttatcccttaactatttaggtagtatcgctttggtcccttaattaaaattcaatttattttggtcccttaacttctctctg 11504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 40094528 - 40094569
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  40094528 cttaattaaaattcaatttattttggttccttaacttctctc 40094569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 44255195 - 44255152
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    |||||||||||||||||||||||||||  | |||||||||||||    
T  44255195 cttaattaaaattcaatttattttggtctcttaacttatctctg 44255152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 18017840 - 18017886
Alignment:
Q  403 tcacttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    |||||||||||||||||||||||||||||| |  |||||| ||||||    
T  18017840 tcacttaattaaaattcaatttattttggtcctttaacttctctctg 18017886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 18018119 - 18018078
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    ||||||||||||||||||||||||||| || |||||| ||||    
T  18018119 cttaattaaaattcaatttattttggtcccttaacttctctc 18018078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 37393530 - 37393571
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    ||||||||||||||||||||||||||| || |||||| ||||    
T  37393530 cttaattaaaattcaatttattttggtcccttaacttctctc 37393571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 8653989 - 8654025
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||||||||||||| || ||||||    
T  8653989 cttaattaaaattcaatttattttggtcccttaactt 8654025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 18622080 - 18622044
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||||||||||||| || ||||||    
T  18622080 cttaattaaaattcaatttattttggtcccttaactt 18622044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 12903274 - 12903315
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  12903274 cttaattaaaattcaatttattttggtcccttaacttatctc 12903315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 33972539 - 33972498
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    ||||||||||||||||||||||||||| || |||||| ||||    
T  33972539 cttaattaaaattcaatttattttggtcccttaacttctctc 33972498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 31029577 - 31029613
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||||||||||||| || ||||||    
T  31029577 cttaattaaaattcaatttattttggtcccttaactt 31029613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 442
Target Start/End: Complemental strand, 38416470 - 38416431
Alignment:
Q  403 tcacttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  38416470 tcacttaattaaaattcgatttattttggttccttaactt 38416431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 448
Target Start/End: Original strand, 31908983 - 31909025
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctct 448  Q
    ||||||||||||||||||||||||||| || |||||| |||||    
T  31908983 cttaattaaaattcaatttattttggtcccttaacttctctct 31909025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 5087860 - 5087896
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  5087860 cttaactaaaattcaatttattttggttccttaactt 5087896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 29864178 - 29864272
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaata---------tcacttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    ||||||| ||||||||||||||||||||||||| || ||         || |||||||||||||| |||||||||||| || |||||| ||||||    
T  29864178 ctaaattgcattttttatcccttaactatttaggtagtatcgctttggtcccttaattaaaattcgatttattttggtcccttaacttttctctg 29864272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 11242848 - 11242804
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaatatcactt 408  Q
    |||||||||||||||  |||||||||||||||| || ||||||||    
T  11242848 ctaaattacatttttggtcccttaactatttaggtagtatcactt 11242804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 40067681 - 40067645
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  40067681 cttaactaaaattcaatttattttggttccttaactt 40067645  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 48209950 - 48209994
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaatatcactt 408  Q
    |||||||||||||||  |||||||||||||||| || ||||||||    
T  48209950 ctaaattacatttttggtcccttaactatttaggtagtatcactt 48209994  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 12303835 - 12303881
Alignment:
Q  403 tcacttaattaaaattcaatttattttggttccctaacttatctctg 449  Q
    ||||||||||||||||| |||||||||||| || ||||| |||||||    
T  12303835 tcacttaattaaaattcgatttattttggtcccttaactcatctctg 12303881  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 4104492 - 4104451
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    |||||||||||||| ||||||||||||||| |||||| ||||    
T  4104492 cttaattaaaattcgatttattttggttccttaacttctctc 4104451  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 34484379 - 34484338
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    |||||||||||||| |||||||||||| || |||||||||||    
T  34484379 cttaattaaaattcgatttattttggtcccttaacttatctc 34484338  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 15829773 - 15829809
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||||||||||||| || ||||||    
T  15829773 cttaattaaaattcaatttattttggtcccttaactt 15829809  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 18565336 - 18565300
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  18565336 cttaattaaaattcgatttattttggttccttaactt 18565300  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 37744451 - 37744495
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaatatcactt 408  Q
    |||||||||||||||  |||||||||||||||| || ||||||||    
T  37744451 ctaaattacatttttggtcccttaactatttaggtagtatcactt 37744495  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 38275841 - 38275797
Alignment:
Q  364 ctaaattacattttttatcccttaactatttagctaatatcactt 408  Q
    ||||||| |||||||| |||||||||||||||| || ||||||||    
T  38275841 ctaaattgcattttttgtcccttaactatttaggtagtatcactt 38275797  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 32706785 - 32706826
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatctc 447  Q
    |||||||||||||| ||||||||||||||| |||||| ||||    
T  32706785 cttaattaaaattcgatttattttggttccttaacttctctc 32706826  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 18731072 - 18731112
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaacttatct 446  Q
    |||||||||||||| |||||||||||| || ||||||||||    
T  18731072 cttaattaaaattcgatttattttggtcccttaacttatct 18731112  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 442
Target Start/End: Original strand, 47250610 - 47250646
Alignment:
Q  406 cttaattaaaattcaatttattttggttccctaactt 442  Q
    ||||||||||||||||||||||||||| || ||||||    
T  47250610 cttaattaaaattcaatttattttggtcccttaactt 47250646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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