View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_19 (Length: 370)
Name: NF9239_low_19
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_19 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 11635707 - 11635410
Alignment:
| Q |
21 |
ggcacctttcctccaatccttgactcaattcaagatgataacatcctccaatgtaaagtgactccagaagaggacatccattcagaatggcaagaagccc |
120 |
Q |
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| T |
11635707 |
ggcacctttcttccaatccttgactcaattcaagatgataacatcctccaatgtaaagtgactcgagaagaggacatccattcagaatggcaagaagccc |
11635608 |
T |
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| Q |
121 |
aatgtcagtgagcctatttccatcaagatgaagacggcgaagtctagacattgtttctgaaataattaaggcatcaccatcatcggcaactggtctattc |
220 |
Q |
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| T |
11635607 |
aatgtcagtgagcctatttccatcaagatgaagacggcgaagtctagacattgtttctgaaataattaaagcatcaccatcatcggcaactggtctattc |
11635508 |
T |
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| Q |
221 |
cacgctctcaaaaatatgagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgataggctacataatgaaatctctaactc |
318 |
Q |
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| T |
11635507 |
cactctctagaaaatatgagagattttaaaagacggcaagatcggccaaggacttcaagagactccttcgataggctacataatgaaatctctaactc |
11635410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 9625303 - 9625255
Alignment:
| Q |
322 |
ctaacaggagcccataagggcttgtcagagtatttgttctcttatctct |
370 |
Q |
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| T |
9625303 |
ctaacaggatccaaaaagggcttggcagagtatttgttctcttatctct |
9625255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 13611943 - 13611991
Alignment:
| Q |
322 |
ctaacaggagcccataagggcttgtcagagtatttgttctcttatctct |
370 |
Q |
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| T |
13611943 |
ctaacaggatccaaaaagggcttggcagagtatttgttctcttatctct |
13611991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 5568994 - 5569051
Alignment:
| Q |
238 |
gagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgatagg |
295 |
Q |
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| T |
5568994 |
gagagattttaaactagggcaagatcggcctaggacttcaagagaatcctttgatagg |
5569051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 5573975 - 5574032
Alignment:
| Q |
238 |
gagagatttaaaaagacggcaagatcggccaaggacttcaagagactccttcgatagg |
295 |
Q |
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| T |
5573975 |
gagagattttaaactagggcaagatcggcctaggacttcaagagaatcctttgatagg |
5574032 |
T |
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