View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_23 (Length: 351)
Name: NF9239_low_23
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 4618570 - 4618882
Alignment:
| Q |
15 |
cagagacacccggcaagaacataaaacattacaccaagaagtaaatacacaaataaagaattgatattcaaaacaaaatcaagctcagcatgttcagaaa |
114 |
Q |
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| T |
4618570 |
cagagacacccggcaagaacataaaacattacaccaagaagtaaatacacaaataaagagttgatattcaaaacaaaatcaggctcagcatgttcagaaa |
4618669 |
T |
|
| Q |
115 |
cttgatgtcaacaaaatccaagtgttcacattagacacaataattaaagcataaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4618670 |
cttgatgtcaacaaaatccaagtgttcacattagacacaataattaaagcataaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttc |
4618769 |
T |
|
| Q |
215 |
taggaacaaaaactgatatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaatta |
314 |
Q |
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| T |
4618770 |
taggaacaaaaactgatatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaatta |
4618869 |
T |
|
| Q |
315 |
ttattgtaataac |
327 |
Q |
| |
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||||||||||||| |
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| T |
4618870 |
ttattgtaataac |
4618882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 7892295 - 7892138
Alignment:
| Q |
125 |
acaaaatccaagtgttcacattagacacaataattaaagcat-aaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaa |
223 |
Q |
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| T |
7892295 |
acaaaatccaagtattcacactagacacaataatcatagcataaaaacaaaaaagaaatggacctgccaccgccgatctagaagccagttctaggaacaa |
7892196 |
T |
|
| Q |
224 |
aaactg--atatgacagtgcagacttgacacttaacctgcaaaacaagtttactagac |
279 |
Q |
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| T |
7892195 |
aagctgctagatgacggtgcagacatcacacttaacctacaaagcaagtttactagac |
7892138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 43043990 - 43044176
Alignment:
| Q |
125 |
acaaaatccaagtgttcacattagacacaataattaaagcat-aaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaa |
223 |
Q |
| |
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|||||||||||||||||| | ||||||||| ||||||||||| ||||| ||| ||| |||| ||||||| ||| |||||||||| |||||| ||||| |
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| T |
43043990 |
acaaaatccaagtgttcagactagacacaacaattaaagcataaaaacaaaacagatatagtactgccaccgtcgatctagaacccagttctgagaacac |
43044089 |
T |
|
| Q |
224 |
aaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac |
308 |
Q |
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|| || || |||| ||||||||||||||||||| || ||||||||| |||||| || ||||||||||| |||||||||||| |
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| T |
43044090 |
aagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagaagagaaatagaaatactaaggaccaaagac |
43044176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 308
Target Start/End: Complemental strand, 43068000 - 43067815
Alignment:
| Q |
125 |
acaaaatccaagtgttcacattagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaa |
223 |
Q |
| |
|
||||||||||||| |||| | ||||||||| ||||||||||||||| |||| ||| | ||| ||||||| ||| |||||||||| |||||| |||||| |
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| T |
43068000 |
acaaaatccaagt-ttcagactagacacaacaattaaagcataaaaataaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaa |
43067902 |
T |
|
| Q |
224 |
aaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac |
308 |
Q |
| |
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|| || || |||| ||||||||||||||||||| || ||||||||| ||||||| || ||||||||||| |||||||||||| |
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| T |
43067901 |
aagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagactagaaatagaaatactaaggaccaaagac |
43067815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 315
Target Start/End: Complemental strand, 45985043 - 45984784
Alignment:
| Q |
56 |
taaatacacaaataaagaattgatattcaaaacaaaatcaagctcagcatgttcagaaacttgatgtcaacaaaatccaagtgttcacattagacacaat |
155 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||| ||| || |||||||| | || | ||||||||||||||||||| ||||||| | |
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| T |
45985043 |
taaacacacaaataaagagttgatattcaaaacaaaatca------gcaggtccagaaactcgctgctagcaaaatccaagtgttcacactagacac--t |
45984952 |
T |
|
| Q |
156 |
aattaaagcataaaacgaa--aaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaa----aaactg--atatgacagtgcagactt |
247 |
Q |
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||||| | ||||||||||| ||| ||||||| | |||| | |||||||||| | |||| |||| || |||||| |||| | |||||||||| |
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| T |
45984951 |
aattagaacataaaacgaacaaaataaatagctattccaccatttatctagaacccaattctgggaagaagaaaaaactgtgatataatggtgcagactt |
45984852 |
T |
|
| Q |
248 |
gacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattat |
315 |
Q |
| |
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|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||| |||| |
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| T |
45984851 |
cacacttaatctgcaaaacaagtttactagaggagaaatagaaatactaaggaccaaagactatttat |
45984784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 43082835 - 43083020
Alignment:
| Q |
125 |
acaaaatccaagtgttcacattagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaa |
223 |
Q |
| |
|
||||||||||||| |||| | ||||||||| ||||||||||||||| |||| ||| | ||| ||||||| ||| |||||||||| |||||| |||||| |
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| T |
43082835 |
acaaaatccaagt-ttcagactagacacaacaattaaagcataaaaacaaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaa |
43082933 |
T |
|
| Q |
224 |
aaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac |
308 |
Q |
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|| || || |||| ||||||||||||||||||| || ||||||||| ||||||| || ||||||||||| |||||| ||||| |
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| T |
43082934 |
aagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagacgagaaatagaaatactaaggacccaagac |
43083020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 3299761 - 3299875
Alignment:
| Q |
160 |
aaagcataaa-acgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaa |
256 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||| ||| |||||| |||| | ||||||||| | || ||||| ||||||||||||||||||| |
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| T |
3299761 |
aaagcataaacacggaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaa |
3299860 |
T |
|
| Q |
257 |
cctgcaaaacaagtt |
271 |
Q |
| |
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| | |||||||||| |
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|
| T |
3299861 |
tccgaaaaacaagtt |
3299875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 38139132 - 38139003
Alignment:
| Q |
133 |
caagtgttcacattagacacaataattaaagcataaaa-cgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactg-- |
229 |
Q |
| |
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||||| |||||| ||||||| |||| | ||||||||| ||||||||||| ||| |||||| ||||||||||| | |||||| ||||||||| ||| |
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|
| T |
38139132 |
caagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacggcc-tgccaccatcaatctagaagccagttcttggaacaaaagctgtg |
38139034 |
T |
|
| Q |
230 |
atatgacagtgcagacttgacacttaacctg |
260 |
Q |
| |
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| ||||| ||||||||||||||||||||||| |
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|
| T |
38139033 |
agatgacggtgcagacttgacacttaacctg |
38139003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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