View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_26 (Length: 323)
Name: NF9239_low_26
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 42852620 - 42852925
Alignment:
| Q |
1 |
agatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtttaactt |
100 |
Q |
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| T |
42852620 |
agatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcacacttatccgagataggatgtaagttactatttgtttgtttaactt |
42852719 |
T |
|
| Q |
101 |
gtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaaatttattactcagattgtgattatatgta |
200 |
Q |
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| T |
42852720 |
gtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaatttttttactcagattgtgattatatgta |
42852819 |
T |
|
| Q |
201 |
gtgtttatagttggtatttttgcgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42852820 |
gtgtttatagttggtatttttgcgacttgcttgacgacattgagacacatttctttttctgctgctgtatagttattgcttatctttgaacttggcaagc |
42852919 |
T |
|
| Q |
301 |
cattct |
306 |
Q |
| |
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|||||| |
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| T |
42852920 |
cattct |
42852925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 42856378 - 42856449
Alignment:
| Q |
223 |
cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttg |
294 |
Q |
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| T |
42856378 |
cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttg |
42856449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 42860445 - 42860516
Alignment:
| Q |
223 |
cgacttgcttgacgacattgaggcgcatttctttttctgctgctgtatagttattgcttatctttgaacttg |
294 |
Q |
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| T |
42860445 |
cgacttgcttgacaacattgagacacatttctttgtcttcagctatatagttattgcttaactttgaacttg |
42860516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 42854041 - 42854103
Alignment:
| Q |
36 |
gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtttaac |
98 |
Q |
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| T |
42854041 |
gaatttcttagagcacgctcatttattcaagagaggatgtaagttaccatttgtttgtttaac |
42854103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 42860281 - 42860383
Alignment:
| Q |
2 |
gatgccatctttaggcggatcagcaattaatacgga------atttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgttt |
95 |
Q |
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|||||||||||||||||||||| | ||||| | ||| |||||||||||||| | || |||| | ||| |||||||||||| |||||||||||||| |
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| T |
42860281 |
gatgccatctttaggcggatcaacgattaacatggaccaagaatttcttagagcacactcatttattcaagagaggatgtaagttgctatttgtttgttt |
42860380 |
T |
|
| Q |
96 |
aac |
98 |
Q |
| |
|
||| |
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|
| T |
42860381 |
aac |
42860383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 42848006 - 42848050
Alignment:
| Q |
102 |
tcaataggtgtaatatttggagattgatattttcttgaaactaac |
146 |
Q |
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||||||||||||||| ||| | ||| ||||||||||||||||||| |
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| T |
42848006 |
tcaataggtgtaatacttgaaaattcatattttcttgaaactaac |
42848050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 21765105 - 21765157
Alignment:
| Q |
36 |
gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttg |
88 |
Q |
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||||||||||| ||||||||| || | |||||| ||||||||||||||||||| |
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| T |
21765105 |
gaatttcttagggcacgcgcagttgtacgagatgggatgtaagttactatttg |
21765157 |
T |
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